View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3950_low_1 (Length: 893)
Name: NF3950_low_1
Description: NF3950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3950_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 98 - 550
Target Start/End: Complemental strand, 35145878 - 35145426
Alignment:
| Q |
98 |
agggactatatgttcacgaggccttgcttagctatgactccaaaactgatacctttcaagcaaggtatacatacgggtagactcacactcttaaacaaaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
35145878 |
agggactatatgttcacgaggccttgcttagctatgactccaaaactgatacctttcaagcaaggtatacatacgggtggaatcacactcttaaacaaaa |
35145779 |
T |
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| Q |
198 |
tactactctagtattgtcataatattttttctctttcaacaagttaaattttgtgatgacattaacggttttatatgagtttaataatttgattatatgg |
297 |
Q |
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| T |
35145778 |
tactactctagtattgtcataatattttttctctttcaacaagttaaattttgtgatgacattaacggttttatatgagtttaataatttgattatatgg |
35145679 |
T |
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| Q |
298 |
aggtgattaaaatgtgtttcatttaggacacgcagtgggaattggaggattgtggggaataaaatccactgggataagcttagaccatccctagttgaaa |
397 |
Q |
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| T |
35145678 |
aggtgattaaaatgtgtttcatttaggacacgcagtgggaattggaggattgtggggaataaaatccactgggataagcttagaccatccctagttgaaa |
35145579 |
T |
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| Q |
398 |
cctcttcatgtgttcgccacgtgtctgattgttatcaagatttaaagcctggggatcatattgaaattcaatggagaggaaacactcaaactccttatgg |
497 |
Q |
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| T |
35145578 |
cctcttcatgtgttcgccacgtgtctgattgttatcaagatttaaaacttggggatcatattgaaattcaatggagaggaaacactcaaactccttatgg |
35145479 |
T |
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| Q |
498 |
taagatcaaatacgatcacaatgattctgagagtacaactcacctaaactttt |
550 |
Q |
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| T |
35145478 |
tgagatcaaatacgatcacaatgattctgagagttcaactcacctaaactttt |
35145426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 579 - 728
Target Start/End: Complemental strand, 35145379 - 35145230
Alignment:
| Q |
579 |
aattcatggttttaattgcagactggtggtatgctgttattggtcacctagattcttgtaatgaaaatgagaattattgcttctgtcaaaactctggtga |
678 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35145379 |
aattcatggttttaattgcagactggtggtatgctgttattggtcacctagattcttgtaatgaaaatgagaattattgcttctgtcaaaactctggtga |
35145280 |
T |
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| Q |
679 |
gaatttttgatcacctagattcaatttttgtatatgcatcagatgcactg |
728 |
Q |
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| T |
35145279 |
gaatttttgatcacctagattcaatttttgtatatgcatcagatgcactg |
35145230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 788 - 875
Target Start/End: Complemental strand, 35145175 - 35145088
Alignment:
| Q |
788 |
gagactttggtggtagagttcaagcaataccctcgtgggtcaagcatgagaaaaacaatgctacgcagacataacaatggggaacaag |
875 |
Q |
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| T |
35145175 |
gagactttggtggtagagttcaagcaataccctcgtgggtcaagcatgagaaaaacaatgctacgcagacataacaatggggaacaag |
35145088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 35145935 - 35145898
Alignment:
| Q |
14 |
attattctccggagtcatatcaaaattcttaaaacgag |
51 |
Q |
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| T |
35145935 |
attattctccggagtcatatcaaaattcttaaaacgag |
35145898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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