View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3950_low_5 (Length: 382)

Name: NF3950_low_5
Description: NF3950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3950_low_5
NF3950_low_5
[»] chr7 (9 HSPs)
chr7 (63-340)||(30384589-30384853)
chr7 (15-52)||(7703820-7703857)
chr7 (15-54)||(20074887-20074926)
chr7 (15-45)||(19683248-19683278)
chr7 (15-53)||(41003154-41003192)
chr7 (15-52)||(25247690-25247727)
chr7 (15-52)||(29177252-29177289)
chr7 (15-52)||(34979077-34979114)
chr7 (15-55)||(26255093-26255133)
[»] chr2 (11 HSPs)
chr2 (15-53)||(16108475-16108513)
chr2 (15-52)||(13197645-13197682)
chr2 (15-54)||(23788967-23789006)
chr2 (25-56)||(35178602-35178633)
chr2 (15-52)||(8841657-8841694)
chr2 (15-52)||(15228149-15228186)
chr2 (18-55)||(15571180-15571217)
chr2 (15-52)||(16805791-16805828)
chr2 (15-52)||(16845072-16845109)
chr2 (15-52)||(22897391-22897428)
chr2 (19-55)||(29239330-29239366)
[»] chr8 (7 HSPs)
chr8 (15-55)||(36177103-36177143)
chr8 (16-54)||(44502618-44502656)
chr8 (15-52)||(40529307-40529344)
chr8 (15-52)||(43654203-43654240)
chr8 (15-52)||(44748463-44748500)
chr8 (15-55)||(2944272-2944312)
chr8 (17-57)||(19176131-19176171)
[»] chr5 (6 HSPs)
chr5 (18-54)||(2106829-2106865)
chr5 (15-49)||(42561349-42561383)
chr5 (15-52)||(15190815-15190852)
chr5 (15-52)||(41384172-41384209)
chr5 (15-47)||(24308140-24308172)
chr5 (15-47)||(24365151-24365183)
[»] chr6 (4 HSPs)
chr6 (18-53)||(25024509-25024544)
chr6 (15-53)||(13011120-13011158)
chr6 (15-52)||(25197152-25197189)
chr6 (16-52)||(13648130-13648166)
[»] chr4 (8 HSPs)
chr4 (15-53)||(15241479-15241517)
chr4 (15-52)||(6753525-6753562)
chr4 (15-52)||(17610020-17610057)
chr4 (15-52)||(24754078-24754115)
chr4 (15-52)||(36391854-36391891)
chr4 (16-52)||(6462691-6462727)
chr4 (15-47)||(16545983-16546015)
chr4 (15-55)||(55632259-55632299)
[»] chr3 (12 HSPs)
chr3 (15-53)||(20656310-20656348)
chr3 (15-52)||(7051720-7051757)
chr3 (15-56)||(21756482-21756523)
chr3 (15-52)||(26221288-26221325)
chr3 (15-52)||(32963105-32963142)
chr3 (15-52)||(33868448-33868485)
chr3 (15-52)||(46878439-46878476)
chr3 (15-52)||(48887946-48887983)
chr3 (15-55)||(10220930-10220970)
chr3 (15-55)||(14428607-14428647)
chr3 (15-55)||(16435236-16435276)
chr3 (15-55)||(35165962-35166002)
[»] chr1 (5 HSPs)
chr1 (18-52)||(28052189-28052223)
chr1 (15-52)||(23893696-23893733)
chr1 (15-52)||(50246929-50246966)
chr1 (15-59)||(23541972-23542016)
chr1 (15-55)||(38261337-38261377)
[»] scaffold0457 (1 HSPs)
scaffold0457 (15-52)||(4663-4700)
[»] scaffold0308 (1 HSPs)
scaffold0308 (15-52)||(14348-14385)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 63 - 340
Target Start/End: Complemental strand, 30384853 - 30384589
Alignment:
Q  63 gataataatgagaatatgtacaggctacatatattaccatcttagtgggaattacggataacaatgagcagcaattaaggggtgaatttcagttgtaaat 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||      
T  30384853 gataataatgagaatatgtacaggctacatatattaccatcttagtgggaattacagataacaatgagcagcaattaaggggtgaatttcagttgtaa-- 30384756  T
Q  163 aggtacactaatgaatatctaaatggaagaacataaccgatgtggggtagcaatagaggagagtagtatagtagatgtattttgaagatgtgtggaatgt 262  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30384755 -----------tgaatatctaaatggaagaacataaccgatgtggggtagcaatagaggagagtagtatagtagatgtattttgaagatgtgtggaatgt 30384667  T
Q  263 gtcaagagaatagtggatgcactaatgttaattcacgttcacgccacaacacacatacactgactctttctcacctat 340  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30384666 gtcaagagaatagtggatgcactaatgttaattaacgttcacgccacaacacacatacactgactctttctcacctat 30384589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 7703820 - 7703857
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7703820 ttctcaaaagaatcttataattaaggacggagggagta 7703857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 20074926 - 20074887
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagtaat 54  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  20074926 ttctcaaaagaatattataattagggacggagggagtaat 20074887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 19683278 - 19683248
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacgga 45  Q
    |||||||||||||||||||||||||||||||    
T  19683278 ttctcaaaagaatcttataattaaggacgga 19683248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 41003154 - 41003192
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagtaa 53  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  41003154 ttctcaaaagggtcttataattaaggacggagggagtaa 41003192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 25247690 - 25247727
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  25247690 ttctcaaaagagtcttataattagggacggagggagta 25247727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 29177252 - 29177289
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  29177252 ttctcaaaaggatcttataattagggacggagggagta 29177289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 34979077 - 34979114
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  34979077 ttctcaaaagagtcttataattagggacggagggagta 34979114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 26255133 - 26255093
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagtaatt 55  Q
    ||||||||||  ||||||||||| |||||||||||||||||    
T  26255133 ttctcaaaagggtcttataattagggacggagggagtaatt 26255093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 16108475 - 16108513
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagtaa 53  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  16108475 ttctcaaaagaatcttataattagggacggagggagtaa 16108513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 13197645 - 13197682
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  13197645 ttctcaaaagaatcttataattagggacggagggagta 13197682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 23789006 - 23788967
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagtaat 54  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  23789006 ttctcaaaagggtcttataattaaggacggagggagtaat 23788967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 35178633 - 35178602
Alignment:
Q  25 aatcttataattaaggacggagggagtaattt 56  Q
    ||||||||||||||||||||||||||||||||    
T  35178633 aatcttataattaaggacggagggagtaattt 35178602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 8841657 - 8841694
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  8841657 ttctcaaaagggtcttataattaaggacggagggagta 8841694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 15228149 - 15228186
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  15228149 ttctcaaaaggatcttataattagggacggagggagta 15228186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 15571217 - 15571180
Alignment:
Q  18 tcaaaagaatcttataattaaggacggagggagtaatt 55  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  15571217 tcaaaagagtcttataattaaggacggaggtagtaatt 15571180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 16805791 - 16805828
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  16805791 ttctcaaaaggatcttataattagggacggagggagta 16805828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 16845072 - 16845109
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  16845072 ttctcaaaaggatcttataattagggacggagggagta 16845109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 22897428 - 22897391
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  22897428 ttctcaaaaggatcttataattagggacggagggagta 22897391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 29239366 - 29239330
Alignment:
Q  19 caaaagaatcttataattaaggacggagggagtaatt 55  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  29239366 caaaagagtcttataattagggacggagggagtaatt 29239330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 36177103 - 36177143
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagtaatt 55  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  36177103 ttctcaaaagagtcttataattagggacggagggagtaatt 36177143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 44502656 - 44502618
Alignment:
Q  16 tctcaaaagaatcttataattaaggacggagggagtaat 54  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  44502656 tctcaaaaggatcttataattagggacggagggagtaat 44502618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 40529344 - 40529307
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  40529344 ttctcaaaaggatcttataattagggacggagggagta 40529307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 43654203 - 43654240
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  43654203 ttctcaaaagagtcttataattagggacggagggagta 43654240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 44748463 - 44748500
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  44748463 ttctcaaaagaatcttataattagggacggaggtagta 44748500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 2944272 - 2944312
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagtaatt 55  Q
    ||||||||||  ||||||||||| |||||||||||||||||    
T  2944272 ttctcaaaagggtcttataattagggacggagggagtaatt 2944312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 19176171 - 19176131
Alignment:
Q  17 ctcaaaagaatcttataattaaggacggagggagtaatttg 57  Q
    ||||||||  ||||||||||||||||||||| |||||||||    
T  19176171 ctcaaaagggtcttataattaaggacggaggtagtaatttg 19176131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 2106865 - 2106829
Alignment:
Q  18 tcaaaagaatcttataattaaggacggagggagtaat 54  Q
    |||||||||||||||||||| ||||||||||||||||    
T  2106865 tcaaaagaatcttataattatggacggagggagtaat 2106829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 42561349 - 42561383
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggaggga 49  Q
    |||||||||| ||||||||||||||||||||||||    
T  42561349 ttctcaaaaggatcttataattaaggacggaggga 42561383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 15190815 - 15190852
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  15190815 ttctcaaaagagtcttataattagggacggagggagta 15190852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 41384172 - 41384209
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  41384172 ttctcaaaaggatcttataattagggacggagggagta 41384209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 24308140 - 24308172
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagg 47  Q
    ||||||||||| |||||||||||||||||||||    
T  24308140 ttctcaaaagagtcttataattaaggacggagg 24308172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 24365183 - 24365151
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagg 47  Q
    ||||||||||| |||||||||||||||||||||    
T  24365183 ttctcaaaagagtcttataattaaggacggagg 24365151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 25024509 - 25024544
Alignment:
Q  18 tcaaaagaatcttataattaaggacggagggagtaa 53  Q
    |||||||||||||||||||| |||||||||||||||    
T  25024509 tcaaaagaatcttataattagggacggagggagtaa 25024544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 13011120 - 13011158
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagtaa 53  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  13011120 ttctcaaaaggatcttataattaaggacggaggtagtaa 13011158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 25197189 - 25197152
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  25197189 ttctcaaaaggatcttataattagggacggagggagta 25197152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 13648130 - 13648166
Alignment:
Q  16 tctcaaaagaatcttataattaaggacggagggagta 52  Q
    |||||||||  ||||||||||||||||||||||||||    
T  13648130 tctcaaaagggtcttataattaaggacggagggagta 13648166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 15241517 - 15241479
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagtaa 53  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  15241517 ttctcaaaagagtcttataattagggacggagggagtaa 15241479  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 6753562 - 6753525
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  6753562 ttctcaaaaggatcttataattagggacggagggagta 6753525  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 17610020 - 17610057
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  17610020 ttctcaaaaggatcttataattagggacggagggagta 17610057  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 24754115 - 24754078
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  24754115 ttctcaaaaggatcttataattagggacggagggagta 24754078  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 36391891 - 36391854
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  36391891 ttctcaaaagggtcttataattaaggacggagggagta 36391854  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 6462691 - 6462727
Alignment:
Q  16 tctcaaaagaatcttataattaaggacggagggagta 52  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  6462691 tctcaaaagaatcttataattagggacggaggtagta 6462727  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 16545983 - 16546015
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagg 47  Q
    |||||||||| ||||||||||||||||||||||    
T  16545983 ttctcaaaaggatcttataattaaggacggagg 16546015  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 55632259 - 55632299
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagtaatt 55  Q
    |||||||||| ||||||||||||  ||||||||||||||||    
T  55632259 ttctcaaaaggatcttataattagagacggagggagtaatt 55632299  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 20656310 - 20656348
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagtaa 53  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  20656310 ttctcaaaagaatcttataattaggaacggagggagtaa 20656348  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 7051720 - 7051757
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  7051720 ttctcaaaaggatcttataattagggacggagggagta 7051757  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 21756523 - 21756482
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagtaattt 56  Q
    ||||||||||  ||||||||||| ||||||||||||||||||    
T  21756523 ttctcaaaagggtcttataattagggacggagggagtaattt 21756482  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 26221325 - 26221288
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  26221325 ttctcaaaagagtcttataattagggacggagggagta 26221288  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 32963105 - 32963142
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  32963105 ttctcaaaaggatcttataattagggacggagggagta 32963142  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 33868485 - 33868448
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  33868485 ttctcaaaaggatcttataattagggacggagggagta 33868448  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 46878439 - 46878476
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  46878439 ttctcaaaagggtcttataattaaggacggagggagta 46878476  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 48887946 - 48887983
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  48887946 ttctcaaaagaatcttataattatggacggaggtagta 48887983  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 10220970 - 10220930
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagtaatt 55  Q
    ||||||||||  ||||||||||| |||||||||||||||||    
T  10220970 ttctcaaaagggtcttataattagggacggagggagtaatt 10220930  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 14428647 - 14428607
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagtaatt 55  Q
    ||||||||||  ||||||||||| |||||||||||||||||    
T  14428647 ttctcaaaagggtcttataattagggacggagggagtaatt 14428607  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 16435236 - 16435276
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagtaatt 55  Q
    |||||||||| ||||||||||||  ||||||||||||||||    
T  16435236 ttctcaaaaggatcttataattagagacggagggagtaatt 16435276  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 35165962 - 35166002
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagtaatt 55  Q
    ||||||||||  ||||||||||||||||| |||||||||||    
T  35165962 ttctcaaaagggtcttataattaaggacgaagggagtaatt 35166002  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 28052223 - 28052189
Alignment:
Q  18 tcaaaagaatcttataattaaggacggagggagta 52  Q
    |||||||||||||||||||||||||||||| ||||    
T  28052223 tcaaaagaatcttataattaaggacggaggtagta 28052189  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 23893696 - 23893733
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  23893696 ttctcaaaagaattttataattaaggacggaggtagta 23893733  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 50246929 - 50246966
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  50246929 ttctcaaaaggatcttataattacggacggagggagta 50246966  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 23542016 - 23541972
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagtaatttgga 59  Q
    ||||||||||  ||||||||||| |||||||||||||| ||||||    
T  23542016 ttctcaaaagggtcttataattagggacggagggagtagtttgga 23541972  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 38261377 - 38261337
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagtaatt 55  Q
    ||||||||||  ||||||||||||||||||||| |||||||    
T  38261377 ttctcaaaagggtcttataattaaggacggaggtagtaatt 38261337  T

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Target: scaffold0457 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 4663 - 4700
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  4663 ttctcaaaagaatcttataattagggacggaggtagta 4700  T

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Target: scaffold0308 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 14348 - 14385
Alignment:
Q  15 ttctcaaaagaatcttataattaaggacggagggagta 52  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  14348 ttctcaaaagggtcttataattaaggacggagggagta 14385  T

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