View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3951_high_2 (Length: 382)
Name: NF3951_high_2
Description: NF3951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3951_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 43007620 - 43007255
Alignment:
| Q |
1 |
attcataaccacgcttgcttggtcctcttccagggaaatattgtggatcactccatagcaagtcatgcatcaaccctacacataccaaacatagataaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43007620 |
attcataaccacgcttgcttggtcctcttccagggagatattgtggatcactccatagcaagtcatgcatcaaccctacacataccaaacatagataaat |
43007521 |
T |
|
| Q |
101 |
aaacaaaactacaatacaaagaaggattatggtgaaatgcaagtaaaaataataataatgacgtgtcttaccttcatcaggaggctcacaaaaccgatta |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43007520 |
aaacaaaactacaatacaaagaaggattatgctgaaatgcaagtaaaaataataataatgacgtgtcttaccttcatcaggaggctcacaaaaccgatta |
43007421 |
T |
|
| Q |
201 |
attgatcggatatcggagagtttgaccccatcaacactaaaaagacctccatggactacgaaaactttcttgtttatcacatgagccaaaggtaaacagc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43007420 |
attgatcggatatcggagagtttgaccccatcaacactaaaaagacctccatggactacgaaaactttcttgtttatcacatgagccaaagataaacagc |
43007321 |
T |
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| Q |
301 |
agaacacttccgcaaatagtttgacaaatcctccattcaactttgagcgcacctcaccctcaaaac |
366 |
Q |
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| T |
43007320 |
agaacacttccgcaaatagtttgacaaatcctccattcaactttgagcgcacctcaccctcaaaac |
43007255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 366
Target Start/End: Complemental strand, 43000275 - 42999910
Alignment:
| Q |
9 |
ccacgcttgcttggtcctcttccagggaaatattgtggatcactccatagcaagtcatgcatcaaccctacacataccaaacata-------gataaata |
101 |
Q |
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| T |
43000275 |
ccacgcttacttggtcctcttccagggagaggttgtggatcactccatagcaagtcatgcatcaaccctacacataccaaacatacatgatagatacata |
43000176 |
T |
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| Q |
102 |
aacaaaactacaatacaaagaag-------gattatggtgaaatgcaagtaaaaataataataatgacgtgtcttaccttcatcaggaggctcacaaaac |
194 |
Q |
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|| |||||||||||||||||||| ||||||| |||| ||||| ||||| | | || |||||||||||||||||||||||||||||||| |
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| T |
43000175 |
aaaaaaactacaatacaaagaagtattacggattatgatgaatagcaagaaaaaaaatttat------gtgtcttaccttcatcaggaggctcacaaaac |
43000082 |
T |
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| Q |
195 |
cgattaattgatcggatatcggagagtttgaccccatcaacactaaaaagacctccatggactacgaaaactttcttgtttatcacatgagccaaaggta |
294 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
43000081 |
cgattaattgatcggatttgagagagtttgaccccatcaacactaaaaagacctccatggacgacgaaaacttttttgtttatcacatgagccaaaggta |
42999982 |
T |
|
| Q |
295 |
aacagcagaacacttccgcaaatagtttgacaaatcctccattcaactttgagcgcacctcaccctcaaaac |
366 |
Q |
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| T |
42999981 |
aacagttgaatacttccgcaaacattttgacaaatttgtcattcaactttgcgcgcacctcaccctcaaaac |
42999910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 169 - 366
Target Start/End: Complemental strand, 19316445 - 19316248
Alignment:
| Q |
169 |
taccttcatcaggaggctcacaaaaccgattaattgatcggatatcggagagtttgaccccatcaacactaaaaagacctccatggactacgaaaacttt |
268 |
Q |
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||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||| |||||||||||||||||||| |
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| T |
19316445 |
taccttcctcgggaggctcacaaaaccgattaattgatcggatttcagagagtttgaccccgtcaacactgaaaagacccccatggactacgaaaacttt |
19316346 |
T |
|
| Q |
269 |
cttgtttatcacatgagccaaaggtaaacagcagaacacttccgcaaatagtttgacaaatcctccattcaactttgagcgcacctcaccctcaaaac |
366 |
Q |
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|| ||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||| | |||||||||||||||||||||| |||||||||| |
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| T |
19316345 |
ctcgtttatcacatgagccaaaggtaaacagcagaatacttctgcaaatagttctacaaatgtttcattcaactttgagcgcacctcgccctcaaaac |
19316248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 19319607 - 19319504
Alignment:
| Q |
8 |
accacgcttgcttggtcctcttccagggaaatattgtggatcactccatagcaagtcatgcatcaaccctacacataccaaacatagataaataaacaaa |
107 |
Q |
| |
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|||||||||||| |||||||||||||||| | ||||||||||||||||||||| ||| |||||| ||||||||||||||||||| ||| ||||||||| |
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| T |
19319607 |
accacgcttgctcggtcctcttccagggagaggttgtggatcactccatagcaactcacacatcaaacctacacataccaaacatatatacataaacaaa |
19319508 |
T |
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| Q |
108 |
acta |
111 |
Q |
| |
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|||| |
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| T |
19319507 |
acta |
19319504 |
T |
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