View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3951_high_5 (Length: 254)
Name: NF3951_high_5
Description: NF3951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3951_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 17620050 - 17620268
Alignment:
| Q |
21 |
gttcgtaagaatattaatgaaaaagaaggtgatgaaggttttatggaggagtttgagaaaagaatgaaggaaaacaataagggttatttgatatggggtt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
17620050 |
gttcgtaagaatattaatgaaaaagaaggtgatgaaggttttatggaggagtttgagaaaagaatgaaagaaaacaacaagggttatttgatatggggtt |
17620149 |
T |
|
| Q |
121 |
gggccccacaaatgttgatacttgaaaataaagctataggaggaattgtgactcattgtggttggagcacaataatggaaagcattaaagttgggttacc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17620150 |
gggccccacaaatgttgatacttgaaaataaagctattggaggaattgtgactcattgtggttggagcacaataatggaaagcattaaagttgggttacc |
17620249 |
T |
|
| Q |
221 |
tataatgagttggcctttg |
239 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
17620250 |
tatggtgagttggcctttg |
17620268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 53 - 239
Target Start/End: Complemental strand, 17572636 - 17572450
Alignment:
| Q |
53 |
tgaaggttttatggaggagtttgagaaaagaatgaaggaaaacaataagggttatttgatatggggttgggccccacaaatgttgatacttgaaaataaa |
152 |
Q |
| |
|
|||||| ||||||||||||||||| || ||| |||| |||| |||||||||||||||||||||||||||||| || ||| |||| |||||||| || ||| |
|
|
| T |
17572636 |
tgaaggatttatggaggagtttgaaaagagagtgaaagaaagcaataagggttatttgatatggggttgggctccccaattgttaatacttgagaacaaa |
17572537 |
T |
|
| Q |
153 |
gctataggaggaattgtgactcattgtggttggagcacaataatggaaagcattaaagttgggttacctataatgagttggcctttg |
239 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||| |||||| | |||||||| || ||||| || ||||| ||| |||||||||| |
|
|
| T |
17572536 |
gctattggaggaatggtgagtcattgtggttggaatacaatagttgaaagcatgaatgttggtttgcctatggtgacttggcctttg |
17572450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 53 - 239
Target Start/End: Complemental strand, 14710233 - 14710047
Alignment:
| Q |
53 |
tgaaggttttatggaggagtttgagaaaagaatgaaggaaaacaataagggttatttgatatggggttgggccccacaaatgttgatacttgaaaataaa |
152 |
Q |
| |
|
|||||| ||||||||||||||||| || ||| |||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14710233 |
tgaaggatttatggaggagtttgaaaagagagtgaaagaaagcaataagggttatttgatatggggttgggcaccacaaatgttgatacttgaaaataaa |
14710134 |
T |
|
| Q |
153 |
gctataggaggaattgtgactcattgtggttggagcacaataatggaaagcattaaagttgggttacctataatgagttggcctttg |
239 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
14710133 |
gctattggaggaattgtgactcattgtggttggagcacaataatggaaagcattaaagttgggttatctatggtgagttggcctttg |
14710047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 186
Target Start/End: Original strand, 26129268 - 26129298
Alignment:
| Q |
156 |
ataggaggaattgtgactcattgtggttgga |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
26129268 |
ataggaggaattgtgactcattgtggttgga |
26129298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 186
Target Start/End: Original strand, 26251551 - 26251579
Alignment:
| Q |
158 |
aggaggaattgtgactcattgtggttgga |
186 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26251551 |
aggaggaattgtgactcattgtggttgga |
26251579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 186
Target Start/End: Original strand, 26298151 - 26298179
Alignment:
| Q |
158 |
aggaggaattgtgactcattgtggttgga |
186 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26298151 |
aggaggaattgtgactcattgtggttgga |
26298179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 53 - 238
Target Start/End: Original strand, 12613594 - 12613779
Alignment:
| Q |
53 |
tgaaggttttatggaggagtttgagaaaagaatgaaggaaaacaataagggttatttgatatggggttgggccccacaaatgttgatacttgaaaataaa |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| || ||| |
|
|
| T |
12613594 |
tgaaggttttatggaggagtttgagaaaagagtgaaagaaagcaataagggttatttgatatggggttgggcaccacaattgttgatacttgagaacaaa |
12613693 |
T |
|
| Q |
153 |
gctataggaggaattgtgactcattgtggttggagcacaataatggaaagcattaaagttgggttacctataatgagttggccttt |
238 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||| || | ||||| | || |||||||| ||||| ||| ||||||||| |
|
|
| T |
12613694 |
gctattggaggaattgtgactcattgtggttggaacacagtagttgaaagtttgaatgttgggttgcctatggtgacttggccttt |
12613779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 14869896 - 14869970
Alignment:
| Q |
68 |
ggagtttgagaaaagaatgaaggaaaacaataagggttatttgatatggggttgggccccacaaatgttgatact |
142 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| || || |||||||||||||||||||| |||||| || ||||||| |
|
|
| T |
14869896 |
ggagtttgagaagagaatgaaggaaagcaacaaaggctatttgatatggggttgggcaccacaactgctgatact |
14869970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 16908788 - 16908701
Alignment:
| Q |
43 |
aagaaggtgatgaaggttttatggaggagtttgagaaaagaatgaaggaaaacaataagggttatttgatatggggttgggccccaca |
130 |
Q |
| |
|
|||| |||||||| |||||| || ||||||||||| |||||||| |||| || || || |||||||||||||||||||| ||||| |
|
|
| T |
16908788 |
aagacggtgatgatggttttttgagtgagtttgagaagagaatgaaagaaagaaacaaaggctatttgatatggggttgggcaccaca |
16908701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University