View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3951_high_6 (Length: 245)

Name: NF3951_high_6
Description: NF3951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3951_high_6
NF3951_high_6
[»] chr5 (1 HSPs)
chr5 (1-78)||(35468301-35468378)
[»] chr6 (1 HSPs)
chr6 (1-78)||(27899104-27899182)
[»] chr1 (3 HSPs)
chr1 (17-78)||(11523245-11523306)
chr1 (22-78)||(41318544-41318601)
chr1 (22-78)||(47820153-47820210)
[»] chr8 (1 HSPs)
chr8 (30-78)||(18603923-18603972)
[»] chr7 (1 HSPs)
chr7 (30-78)||(42561797-42561846)


Alignment Details
Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 35468378 - 35468301
Alignment:
Q  1 aaaataaacttgaccagaaagaaaaaatcaatcaaatttaaatgcaaggatatttttgtctttttaaaattaaacaca 78  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35468378 aaaataaacttgaccaaaaagaaaaaatcaatcaaatttaaatgcaaggatatttttgtctttttaaaattaaacaca 35468301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 27899182 - 27899104
Alignment:
Q  1 aaaataaacttgaccagaaagaaaaaa-tcaatcaaatttaaatgcaaggatatttttgtctttttaaaattaaacaca 78  Q
    |||||||||||||||| |||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  27899182 aaaataaacttgaccaaaaagaaaaaaatcaatcaaaattaaatgcaaagatatttttgtctttttaaaattaaacaca 27899104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 11523306 - 11523245
Alignment:
Q  17 gaaagaaaaaatcaatcaaatttaaatgcaaggatatttttgtctttttaaaattaaacaca 78  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11523306 gaaaaaaaaaatcaatcaaatttaaatgcaaggatatttttgtctttttaaaattaaacaca 11523245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 41318601 - 41318544
Alignment:
Q  22 aaaaaatcaatcaaatttaaatgcaaggatatttttgtctttttaaaat-taaacaca 78  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  41318601 aaaaaatcaatcaattttaaatgcaaggatatttttgtctttttaaaatataaacaca 41318544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 47820210 - 47820153
Alignment:
Q  22 aaaaaatcaatcaaatttaaatgcaaggatatttttgtctttttaaaat-taaacaca 78  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  47820210 aaaaaatcaatcaattttaaatgcaaggatatttttgtctttttaaaatctaaacaca 47820153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 18603972 - 18603923
Alignment:
Q  30 aatcaaatttaaatgcaaggatatttttgtctttttaaaat-taaacaca 78  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  18603972 aatcaattttaaatgcaaggatatttttgtctttttaaaatctaaacaca 18603923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 42561797 - 42561846
Alignment:
Q  30 aatcaaatttaaatgcaaggatatttttgtctttttaaaat-taaacaca 78  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  42561797 aatcaattttaaatgcaaggatatttttgtctttttaaaatctaaacaca 42561846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University