View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3951_low_10 (Length: 242)
Name: NF3951_low_10
Description: NF3951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3951_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 11119463 - 11119686
Alignment:
| Q |
1 |
ccccagccatcctctcttcttccctgtcataaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcattgtctgcttcacc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11119463 |
ccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcgttgtctgcttcacc |
11119562 |
T |
|
| Q |
101 |
aacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcagcttaggttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
11119563 |
aacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataaaatcagcaacatttataccatttcctaaattcaccttaggttca |
11119662 |
T |
|
| Q |
201 |
atatacaattcaacatcgcacttc |
224 |
Q |
| |
|
| ||||||||||||||| |||||| |
|
|
| T |
11119663 |
acatacaattcaacatcacacttc |
11119686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 12205972 - 12206172
Alignment:
| Q |
1 |
ccccagccatcctctcttcttccctgtcataaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcattgtctgcttcacc |
100 |
Q |
| |
|
|||||||||||||||||||||| || |||| |||||||| |||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
12205972 |
ccccagccatcctctcttcttcactatcattaaagtgtgcgcctttaattgaatcaccatcatcactactaacatcttcatcatcactgtctgcttcacc |
12206071 |
T |
|
| Q |
101 |
aacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcagcttaggttca |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12206072 |
aacattgccttcaacttaatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcaccttaggttca |
12206171 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
|
| |
|
|
| T |
12206172 |
a |
12206172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 32741170 - 32741389
Alignment:
| Q |
4 |
cagccatcctctcttcttccctgtcataaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcattgtctgcttcaccaac |
103 |
Q |
| |
|
|||||||| |||||||||| || |||| |||| |||||||||| ||| ||||||||||||||||||||||||||||| |||| ||||| |||||||||| |
|
|
| T |
32741170 |
cagccatcttctcttcttcactatcatcaaagcgtgtgcctttaattaaatcaccatcatcactactaacatctccaccatcgatgtctacttcaccaac |
32741269 |
T |
|
| Q |
104 |
attgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcagcttaggttcaata |
203 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||| | |
|
|
| T |
32741270 |
atcgccttcaatttcatccgccactacaccctttcccttttgttccccaataacatcagcaacaattatagcatttcctaaattcaccttaggttcaaca |
32741369 |
T |
|
| Q |
204 |
tacaattcaacatcgcactt |
223 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
32741370 |
tacaattcaacatcgcactt |
32741389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University