View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3951_low_11 (Length: 239)

Name: NF3951_low_11
Description: NF3951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3951_low_11
NF3951_low_11
[»] chr3 (6 HSPs)
chr3 (16-222)||(31649478-31649683)
chr3 (59-169)||(3445220-3445330)
chr3 (62-149)||(215493-215580)
chr3 (65-171)||(6581162-6581268)
chr3 (60-126)||(15686470-15686536)
chr3 (62-140)||(18476658-18476736)
[»] chr8 (3 HSPs)
chr8 (59-149)||(23864683-23864773)
chr8 (59-166)||(12377085-12377192)
chr8 (62-140)||(9996229-9996307)
[»] chr7 (8 HSPs)
chr7 (59-149)||(24813778-24813868)
chr7 (59-140)||(15708034-15708115)
chr7 (59-140)||(23175097-23175178)
chr7 (59-140)||(26195672-26195753)
chr7 (62-140)||(42635977-42636055)
chr7 (62-140)||(10658113-10658191)
chr7 (72-149)||(11407178-11407255)
chr7 (72-147)||(10310417-10310492)
[»] chr5 (5 HSPs)
chr5 (59-149)||(22979597-22979687)
chr5 (59-140)||(9522395-9522479)
chr5 (62-140)||(22184956-22185034)
chr5 (59-142)||(20126877-20126960)
chr5 (60-109)||(11756421-11756470)
[»] chr2 (4 HSPs)
chr2 (59-137)||(24318027-24318105)
chr2 (62-172)||(26863299-26863409)
chr2 (59-140)||(24317407-24317488)
chr2 (118-166)||(20649831-20649879)
[»] scaffold0423 (1 HSPs)
scaffold0423 (60-149)||(13460-13549)
[»] chr1 (2 HSPs)
chr1 (62-140)||(12752791-12752869)
chr1 (64-140)||(47941694-47941770)
[»] chr6 (3 HSPs)
chr6 (62-138)||(24501556-24501632)
chr6 (62-140)||(34657505-34657583)
chr6 (62-166)||(28623226-28623330)
[»] chr4 (6 HSPs)
chr4 (59-137)||(50907716-50907794)
chr4 (62-140)||(33737714-33737792)
chr4 (62-140)||(33745698-33745776)
chr4 (62-140)||(9068676-9068753)
chr4 (62-140)||(10721753-10721831)
chr4 (62-140)||(10935522-10935600)
[»] scaffold0008 (1 HSPs)
scaffold0008 (62-140)||(40062-40140)


Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 31649683 - 31649478
Alignment:
Q  16 aattctcatgtgcctttttacttttctgtccnnnnnnnnatccgtttgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtct 115  Q
    |||||||||||| ||||||||||||||||||        ||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  31649683 aattctcatgtgtctttttacttttctgtccttttttt-atctgtttgttttctgctagctcgatgttgaaacatcttactcaacattttgtttatgtct 31649585  T
Q  116 aatgttgaaacatcgtataaaacattaggaagctggtgttccggaatttcatatttaaagacaaaattttaaacaaaaagatactaagatatatgaactg 215  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31649584 gatgttgaaacatcgtataaaacattacgaagctggtgttccggaatttcatatttaaagacaaaattttaaacaaaaagatactaagatatatgaactg 31649485  T
Q  216 agggagt 222  Q
    |||||||    
T  31649484 agggagt 31649478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 169
Target Start/End: Original strand, 3445220 - 3445330
Alignment:
Q  59 gtttgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacattaggaagctggtgttccg 158  Q
    ||||||||||||||||||||||||| ||||||    ||||||||||| |||| |||| ||||||||||||||||||||||||||||||| |  ||| |||    
T  3445220 gtttgttttctgctagctcgatgtttaaacattaacctcaacattttatttgtgtctgatgttgaaacatcgtataaaacattaggaagttaatgtgccg 3445319  T
Q  159 gaatttcatat 169  Q
    |||||||||||    
T  3445320 gaatttcatat 3445330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 215493 - 215580
Alignment:
Q  62 tgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacattaggaagct 149  Q
    |||||||||||||||||||||||||| ||||||||||||||  |||||| |||| |||||||||||| ||||||||||| ||||||||    
T  215493 tgttttctgctagctcgatgttgaaatatcttactcaacatactgtttgtgtctgatgttgaaacattgtataaaacatcaggaagct 215580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 6581162 - 6581268
Alignment:
Q  65 tttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacattaggaagctggtgttccggaattt 164  Q
    ||||||||||||||||||| ||||||||||||||||||| |||| |  ||| ||||||||||||||||||||||||  | ||||| |  |||| ||||||    
T  6581162 tttctgctagctcgatgttaaaacatcttactcaacattatgttcgtatctgatgttgaaacatcgtataaaacatatgaaagctagccttccagaattt 6581261  T
Q  165 catattt 171  Q
    |||||||    
T  6581262 catattt 6581268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 15686470 - 15686536
Alignment:
Q  60 tttgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaac 126  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||    
T  15686470 tttgttttctgctagctcgatgttgaaacatcttactcaacattctgtttgtgtctgatgttgaaac 15686536  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 18476736 - 18476658
Alignment:
Q  62 tgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacat 140  Q
    |||||||||||||||||||||| ||||||||||||| ||||| |||| |  ||| ||||||||||||||||||||||||    
T  18476736 tgttttctgctagctcgatgttaaaacatcttactcgacattctgttcgtatctgatgttgaaacatcgtataaaacat 18476658  T

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Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 23864683 - 23864773
Alignment:
Q  59 gtttgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacattaggaagct 149  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||    
T  23864683 gtttgttctctgctagctcgaagttgaaacatcttactcaacattatgtttgtgtctgatgttgaaacatcgtataaaacatcaggaagct 23864773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 12377085 - 12377192
Alignment:
Q  59 gtttgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacattaggaagctggtgttccg 158  Q
    |||||||||||||||||| |||||| ||||||    ||||||||| |||||| || | ||||||||||||||||||||||||||||||||| | || |||    
T  12377085 gtttgttttctgctagcttgatgtttaaacattaatctcaacattctgtttgtgtatgatgttgaaacatcgtataaaacattaggaagctagcgtgccg 12377184  T
Q  159 gaatttca 166  Q
    || |||||    
T  12377185 gagtttca 12377192  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 9996307 - 9996229
Alignment:
Q  62 tgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacat 140  Q
    |||||||||||||||||||||| ||||||||| ||| ||||| |||| |  ||| ||||||||||||||||||||||||    
T  9996307 tgttttctgctagctcgatgttaaaacatcttcctcgacattatgttcgtatctgatgttgaaacatcgtataaaacat 9996229  T

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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 24813868 - 24813778
Alignment:
Q  59 gtttgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacattaggaagct 149  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| ||| ||||    
T  24813868 gtttgttttctgctagctcgatgttaaaacatcttactcaacattttgtttgtgtctgatgttgaaatatcgtataaaacatcaggcagct 24813778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 15708115 - 15708034
Alignment:
Q  59 gtttgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacat 140  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  15708115 gtttgttttctgctagctcgatgttaaaatatcttactcaacattttgtttatgtctaatgttgaaacatcgtataaaacat 15708034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 23175097 - 23175178
Alignment:
Q  59 gtttgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacat 140  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| ||||||||||    
T  23175097 gtttgttttctactagctcgatgttgaaacatcttactcaacattctgtttgagtctgatgttgaaacatcatataaaacat 23175178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 26195672 - 26195753
Alignment:
Q  59 gtttgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacat 140  Q
    ||||||||| ||||| ||||||||||||| ||||||||||||||||| |||  |||| ||||||||||||||||||||||||    
T  26195672 gtttgttttatgctaactcgatgttgaaatatcttactcaacattttatttctgtcttatgttgaaacatcgtataaaacat 26195753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 42636055 - 42635977
Alignment:
Q  62 tgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacat 140  Q
    |||||||||| ||||||||||| ||||||||||||| ||||| |||| |  ||| ||||||||||||||||||||||||    
T  42636055 tgttttctgccagctcgatgttaaaacatcttactcgacattatgttcgtatctgatgttgaaacatcgtataaaacat 42635977  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 10658191 - 10658113
Alignment:
Q  62 tgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacat 140  Q
    ||||||||||||||||  |||| ||||||||||||| ||||| |||| |  ||| ||||||||||||||||||||||||    
T  10658191 tgttttctgctagctcattgttaaaacatcttactcgacattatgttcgtatctgatgttgaaacatcgtataaaacat 10658113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 11407178 - 11407255
Alignment:
Q  72 tagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacattaggaagct 149  Q
    |||||||||||| ||||||    |||||||| ||||||| ||||  ||||||||||| ||||||||||| ||||||||    
T  11407178 tagctcgatgtttaaacattaatctcaacatattgtttgtgtcttgtgttgaaacattgtataaaacatcaggaagct 11407255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 10310417 - 10310492
Alignment:
Q  72 tagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacattaggaag 147  Q
    |||||||||||| ||||||    || ||||| ||||||| ||||  ||||||||||||||||||||||| ||||||    
T  10310417 tagctcgatgtttaaacattaatctgaacatattgtttgtgtctcgtgttgaaacatcgtataaaacatcaggaag 10310492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 22979687 - 22979597
Alignment:
Q  59 gtttgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacattaggaagct 149  Q
    ||||||||||||||||||||||||| |||||||||||| |||||| |||||  |||| |||||||||||||||||||||||||||||||||    
T  22979687 gtttgttttctgctagctcgatgtttaaacatcttactaaacattatgtttatgtctgatgttgaaacatcgtataaaacattaggaagct 22979597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 9522479 - 9522395
Alignment:
Q  59 gtttgttttctgctagctcgatgttgaaacatcttactcaacattttgt---ttgcgtctaatgttgaaacatcgtataaaacat 140  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||  |||   ||| |||| |||||||||||| |||||||||||    
T  9522479 gtttgttttctgctatctcgatgttaaaacatcttactcaacatcatgtttgttgtgtctgatgttgaaacattgtataaaacat 9522395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 22184956 - 22185034
Alignment:
Q  62 tgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacat 140  Q
    ||||||| |||||||||||||| ||||||||||||| ||||| |||| |  ||| ||||||||||||| ||||||||||    
T  22184956 tgttttcagctagctcgatgttaaaacatcttactcgacattctgttcgtatctgatgttgaaacatcatataaaacat 22185034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 20126960 - 20126877
Alignment:
Q  59 gtttgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacatta 142  Q
    ||||||||||||||||||||||||| |||||||   |  |||||  |||||| |||| |||||||||||||||| |||||||||    
T  20126960 gtttgttttctgctagctcgatgtttaaacatcaatcagaacatcctgtttgtgtctgatgttgaaacatcgtacaaaacatta 20126877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 11756421 - 11756470
Alignment:
Q  60 tttgttttctgctagctcgatgttgaaacatcttactcaacattttgttt 109  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||||||    
T  11756421 tttgttttatgctagcttgatgttgaaacatcttactcaatattttgttt 11756470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 24318027 - 24318105
Alignment:
Q  59 gtttgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaa 137  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  24318027 gtttgttttctgctagctcgatgatgaaatatcttactcgacattctgtttgtgtctaatgttgaaacatcgtataaaa 24318105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 26863299 - 26863409
Alignment:
Q  62 tgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacattaggaagctggtgttccggaa 161  Q
    |||||||||||||||||||||| ||||||| ||||| ||||| ||||||  ||| ||||||||||||||||||||||||  | ||||| || | || |||    
T  26863299 tgttttctgctagctcgatgttaaaacatcgtactcgacattctgtttgtatctgatgttgaaacatcgtataaaacatctgaaagctagtctgccagaa 26863398  T
Q  162 tttcatattta 172  Q
    |||||||||||    
T  26863399 tttcatattta 26863409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 24317407 - 24317488
Alignment:
Q  59 gtttgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacat 140  Q
    ||||||||||||||||||||||| ||||||||||||| | ||||| |||||| |||| || |||||||||| ||||||||||    
T  24317407 gtttgttttctgctagctcgatgatgaaacatcttacccgacattatgtttgtgtctgatattgaaacatcatataaaacat 24317488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 20649831 - 20649879
Alignment:
Q  118 tgttgaaacatcgtataaaacattaggaagctggtgttccggaatttca 166  Q
    ||||||||||||| ||||||||| ||||||||||  | |||||||||||    
T  20649831 tgttgaaacatcgcataaaacatcaggaagctggcttgccggaatttca 20649879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0423 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 13549 - 13460
Alignment:
Q  60 tttgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacattaggaagct 149  Q
    |||||||||| ||||||||||||| ||||||    ||||||||| |||||| |||| |||||||||||||||||||||||||||||||||    
T  13549 tttgttttctcctagctcgatgtttaaacattaatctcaacattctgtttgtgtctgatgttgaaacatcgtataaaacattaggaagct 13460  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 12752869 - 12752791
Alignment:
Q  62 tgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacat 140  Q
    |||||||||||||||||||||| ||||||||||||| ||||| |||| |  ||| ||||||||||||||||||||||||    
T  12752869 tgttttctgctagctcgatgttaaaacatcttactcgacattatgttcgtatctgatgttgaaacatcgtataaaacat 12752791  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 47941694 - 47941770
Alignment:
Q  64 ttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacat 140  Q
    ||||||| ||| || ||||| ||||||||||||| |||||  ||| |  ||| ||||||||||||||||||||||||    
T  47941694 ttttctgttagttcaatgttaaaacatcttactcgacattccgttcgtatctgatgttgaaacatcgtataaaacat 47941770  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 24501632 - 24501556
Alignment:
Q  62 tgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaac 138  Q
    |||||||||||||||||||||| ||||||||||||| ||||| |||| |  ||| ||||||||||||||||||||||    
T  24501632 tgttttctgctagctcgatgttaaaacatcttactcgacattatgttcgtatctgatgttgaaacatcgtataaaac 24501556  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 34657505 - 34657583
Alignment:
Q  62 tgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacat 140  Q
    |||||||||||||||||||||| ||||||||||||| | ||| |||| |  ||| ||||||||||||||||||||||||    
T  34657505 tgttttctgctagctcgatgttaaaacatcttactcgatattctgttcgtatctgatgttgaaacatcgtataaaacat 34657583  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 28623330 - 28623226
Alignment:
Q  62 tgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacattaggaagctggtgttccggaa 161  Q
    ||||||| |||||||||||||| |||||| |||||| ||||| |||| |  | | ||||||||||||||||||||||||| | ||||| |  | ||||||    
T  28623330 tgttttcagctagctcgatgtttaaacatattactcgacattatgttcgtatatgatgttgaaacatcgtataaaacatttgaaagctagcctaccggaa 28623231  T
Q  162 tttca 166  Q
    |||||    
T  28623230 tttca 28623226  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 50907794 - 50907716
Alignment:
Q  59 gtttgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaa 137  Q
    ||||||||||| || |||||||||||||||||||||||||||||  |||||| || | ||||| |||||||||||||||    
T  50907794 gtttgttttcttctggctcgatgttgaaacatcttactcaacatcctgtttgtgtttgatgttaaaacatcgtataaaa 50907716  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 33737792 - 33737714
Alignment:
Q  62 tgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacat 140  Q
    |||||||||||| ||| ||||| ||||||||||||||||||| |||| |  | | ||||||||||||||||||||||||    
T  33737792 tgttttctgctaactcaatgttaaaacatcttactcaacattatgttcgtatttgatgttgaaacatcgtataaaacat 33737714  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 33745776 - 33745698
Alignment:
Q  62 tgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacat 140  Q
    ||||||||||||||||||| || ||||||||||||  ||||| |||| |  ||| ||||||||||||||||||||||||    
T  33745776 tgttttctgctagctcgatcttaaaacatcttactggacattatgttcgtatctgatgttgaaacatcgtataaaacat 33745698  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 9068753 - 9068676
Alignment:
Q  62 tgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacat 140  Q
    |||||||| ||||||||||||| ||||||||||||| ||||| ||||    ||| ||||||||||||||||||||||||    
T  9068753 tgttttctactagctcgatgttaaaacatcttactcgacattatgttcta-tctgatgttgaaacatcgtataaaacat 9068676  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 10721831 - 10721753
Alignment:
Q  62 tgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacat 140  Q
    |||||||||||| ||||||||| ||||||||||||| | ||| |||| |  | | ||||||||||||||||||||||||    
T  10721831 tgttttctgctaactcgatgttaaaacatcttactcgatattctgttcgtatatgatgttgaaacatcgtataaaacat 10721753  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 10935600 - 10935522
Alignment:
Q  62 tgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacat 140  Q
    |||||||||||| ||||||||| ||||||||||||| | ||| |||| |  | | ||||||||||||||||||||||||    
T  10935600 tgttttctgctaactcgatgttaaaacatcttactcgatattctgttcgtatatgatgttgaaacatcgtataaaacat 10935522  T

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Target: scaffold0008 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 40140 - 40062
Alignment:
Q  62 tgttttctgctagctcgatgttgaaacatcttactcaacattttgtttgcgtctaatgttgaaacatcgtataaaacat 140  Q
    |||||||||||||||| || || ||||||||||||  ||||| || | |  ||| ||||||||||||||||||||||||    
T  40140 tgttttctgctagctcaatattaaaacatcttacttgacattctgctcgtatctgatgttgaaacatcgtataaaacat 40062  T

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