View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3951_low_5 (Length: 282)

Name: NF3951_low_5
Description: NF3951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3951_low_5
NF3951_low_5
[»] chr5 (27 HSPs)
chr5 (23-267)||(43387944-43388190)
chr5 (23-253)||(38640737-38640969)
chr5 (23-224)||(38640973-38641177)
chr5 (24-235)||(28445284-28445497)
chr5 (24-224)||(8739067-8739270)
chr5 (23-224)||(16429111-16429316)
chr5 (89-231)||(34530247-34530390)
chr5 (56-224)||(27494067-27494235)
chr5 (81-224)||(34530073-34530216)
chr5 (89-178)||(28445155-28445245)
chr5 (109-235)||(4650124-4650250)
chr5 (89-178)||(8738931-8739021)
chr5 (89-224)||(16429321-16429457)
chr5 (89-175)||(8973555-8973642)
chr5 (166-253)||(34440748-34440837)
chr5 (150-253)||(26319132-26319229)
chr5 (166-253)||(36359604-36359692)
chr5 (118-171)||(21070458-21070512)
chr5 (95-164)||(28083330-28083400)
chr5 (190-224)||(36359135-36359169)
chr5 (190-224)||(38641182-38641216)
chr5 (95-171)||(6156823-6156900)
chr5 (103-171)||(29862704-29862773)
chr5 (103-171)||(40613635-40613704)
chr5 (96-164)||(31929078-31929146)
chr5 (23-86)||(37183565-37183631)
chr5 (24-86)||(38692567-38692633)
[»] chr3 (14 HSPs)
chr3 (23-235)||(45244456-45244671)
chr3 (37-224)||(8735263-8735453)
chr3 (37-224)||(9087504-9087694)
chr3 (25-224)||(45244676-45244878)
chr3 (90-224)||(8735470-8735605)
chr3 (90-224)||(9087711-9087846)
chr3 (27-235)||(32025054-32025254)
chr3 (166-253)||(48304044-48304131)
chr3 (89-176)||(33842020-33842108)
chr3 (160-224)||(44085434-44085498)
chr3 (23-88)||(29048637-29048705)
chr3 (190-224)||(48304559-48304593)
chr3 (119-171)||(47979982-47980035)
chr3 (96-171)||(501094-501170)
[»] chr1 (11 HSPs)
chr1 (27-253)||(43319073-43319302)
chr1 (24-224)||(43318859-43319062)
chr1 (23-219)||(9445973-9446172)
chr1 (23-251)||(800677-800906)
chr1 (89-224)||(800538-800674)
chr1 (89-201)||(9445832-9445945)
chr1 (150-206)||(24471323-24471379)
chr1 (23-86)||(42546277-42546342)
chr1 (190-253)||(38950322-38950385)
chr1 (190-224)||(38950833-38950867)
chr1 (96-171)||(41584618-41584694)
[»] chr2 (11 HSPs)
chr2 (27-253)||(9847297-9847526)
chr2 (23-224)||(9847085-9847289)
chr2 (27-235)||(25715431-25715633)
chr2 (23-233)||(25715633-25715835)
chr2 (77-224)||(34519466-34519614)
chr2 (89-224)||(17766770-17766906)
chr2 (23-86)||(25217553-25217619)
chr2 (160-209)||(33367019-33367068)
chr2 (96-164)||(41203134-41203203)
chr2 (23-86)||(42894686-42894752)
chr2 (23-86)||(44465519-44465585)
[»] chr8 (16 HSPs)
chr8 (37-253)||(41530723-41530942)
chr8 (23-251)||(24627622-24627854)
chr8 (26-224)||(24627859-24628060)
chr8 (23-235)||(31234605-31234821)
chr8 (37-202)||(10833407-10833575)
chr8 (23-235)||(33472138-33472352)
chr8 (143-235)||(7970993-7971085)
chr8 (89-220)||(31234464-31234596)
chr8 (89-224)||(33472355-33472491)
chr8 (24-171)||(9845316-9845465)
chr8 (56-116)||(36403749-36403809)
chr8 (199-253)||(36404208-36404261)
chr8 (185-224)||(41530964-41531003)
chr8 (23-86)||(8885236-8885302)
chr8 (96-171)||(8885406-8885482)
chr8 (96-171)||(44106353-44106429)
[»] chr7 (11 HSPs)
chr7 (23-235)||(5731063-5731277)
chr7 (89-227)||(8214236-8214375)
chr7 (23-219)||(8214378-8214578)
chr7 (23-173)||(16278234-16278388)
chr7 (89-231)||(5730922-5731065)
chr7 (23-88)||(7115053-7115121)
chr7 (115-171)||(48776183-48776240)
chr7 (96-171)||(9151926-9152002)
chr7 (23-86)||(9152100-9152166)
chr7 (96-171)||(28230421-28230497)
chr7 (23-86)||(42925424-42925490)
[»] chr6 (6 HSPs)
chr6 (37-233)||(17501144-17501348)
chr6 (27-200)||(17500967-17501144)
chr6 (96-171)||(2539581-2539657)
chr6 (23-54)||(8120160-8120191)
chr6 (23-85)||(21514815-21514880)
chr6 (96-171)||(4508255-4508331)
[»] chr4 (16 HSPs)
chr4 (27-224)||(25140597-25140797)
chr4 (56-181)||(25140835-25140961)
chr4 (144-235)||(7794205-7794296)
chr4 (144-235)||(7817361-7817451)
chr4 (23-202)||(42660253-42660435)
chr4 (89-233)||(25140452-25140597)
chr4 (166-235)||(50392453-50392522)
chr4 (115-178)||(14474184-14474247)
chr4 (190-224)||(42660214-42660248)
chr4 (190-224)||(50391680-50391714)
chr4 (115-171)||(7931795-7931852)
chr4 (95-171)||(25752396-25752473)
chr4 (23-86)||(25752227-25752293)
chr4 (96-171)||(40703802-40703878)
chr4 (95-178)||(41323044-41323128)
chr4 (23-86)||(54631276-54631342)
[»] scaffold0016 (2 HSPs)
scaffold0016 (24-219)||(205684-205883)
scaffold0016 (23-79)||(205894-205952)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 23 - 267
Target Start/End: Original strand, 43387944 - 43388190
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaa 120  Q
    |||||||||||| |||||||||||||||||| |  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43387944 ggtctaaatgatggaattttggattttgaggacggagtcccgtaagaagtcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaa 43388043  T
Q  121 gattaatattgtccttagaaaactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatg 220  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||    
T  43388044 gattaatattgtccttaaaaaactatccatgttataaatatgttcagaattggtgttggtactgtctgaattacgtaatccggattgcatcagcaccatg 43388143  T
Q  221 aaaagaatggtgtttcggaggttttcggattattttgatgtgattat 267  Q
    |||| || ||||||| |||||||||||||||||||||||||||||||    
T  43388144 aaaaaaagggtgtttaggaggttttcggattattttgatgtgattat 43388190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 23 - 253
Target Start/End: Complemental strand, 38640969 - 38640737
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaa 120  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||||| || ||| |||||||||||| ||||||||||||||||||||||||||| |||    
T  38640969 ggtctaaatgatggaattttggattttgagggcgtagtcccgtaagaagtcatttataagggagtcttgatcataaaaacacaaggacgaaagctatgaa 38640870  T
Q  121 gattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccat 219  Q
    ||||||||||||||||| |   ||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  38640869 gattaatattgtccttaaattgactatccatgttataaacatgttcagaattggtgttggtgctgtccggattacgtaatccggattgcatcagcaccat 38640770  T
Q  220 gaaaagaatggtgtttcggaggttttcggattat 253  Q
    ||||| || ||||||| || ||| ||||||||||    
T  38640769 gaaaaaaagggtgtttagg-ggtgttcggattat 38640737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 38641177 - 38640973
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagggcag--tcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaa 120  Q
    ||||||||||||| |||||||||||||||||||||  ||||||||||| ||  |||||||| |||||| |||||||||||||||||| |||| |||||||    
T  38641177 ggtctaaatgataaaattttggattttgagggcagggtcccgtaagaagtctcttctaaggaagtcttgatcataaaaacacaaggatgaaaactaggaa 38641078  T
Q  121 gattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccat 219  Q
    ||||||||||||||||| ||  |||||| |||||| ||| |||||||||||||||||||||||||||| ||||| ||||||| |||||||| ||| ||||    
T  38641077 gattaatattgtccttaaaatgactatctatgttacaaacatgttcagaattggtgttggtgctgtccgaattatgtaatccagattgcattagccccat 38640978  T
Q  220 gaaaa 224  Q
    |||||    
T  38640977 gaaaa 38640973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 24 - 235
Target Start/End: Original strand, 28445284 - 28445497
Alignment:
Q  24 gtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaag 121  Q
    ||||||| ||| ||||||||||||||||||||  |||  | |||||| ||| ||||||||||||||| ||| |||||||||||||| ||||||||  |||    
T  28445284 gtctaaacgatggaattttggattttgagggcggagtatcataagaagtcccttctaagggagtcttgatcttaaaaacacaaggatgaaagctacaaag 28445383  T
Q  122 attaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatg 220  Q
    |||||||||||||||| ||  ||||||||||||| ||| |||||||||||| ||| ||||| |||||  ||||||||||||| | |||||| | ||||||    
T  28445384 attaatattgtccttaaaatgactatccatgttacaaacatgttcagaattcgtgctggtgatgtccggattacgtaatccgaactgcatcggtaccatg 28445483  T
Q  221 aaaagaatggtgttt 235  Q
    |||| ||||||||||    
T  28445484 aaaa-aatggtgttt 28445497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 8739067 - 8739270
Alignment:
Q  24 gtctaaatgatagaattttggattttgagggc---agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaa 120  Q
    |||||||| ||||||||||||||||||||||    |||||||||| || | | ||||||||||||||| |||  |||| |||||||| || || ||||||    
T  8739067 gtctaaataatagaattttggattttgaggggcggagtcccgtaataagttccttctaagggagtcttgatcc-aaaagcacaaggatgagagttaggaa 8739165  T
Q  121 gattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccat 219  Q
    ||||||||||||||||| ||  |||| |||||||| ||| |||||||||||||||| |||||| ||    ||||||||||||| ||||||||||||||||    
T  8739166 gattaatattgtccttaaaatgactacccatgttacaaacatgttcagaattggtgctggtgcagtttggattacgtaatccgaattgcatcagcaccat 8739265  T
Q  220 gaaaa 224  Q
    |||||    
T  8739266 gaaaa 8739270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 16429316 - 16429111
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagggc---agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctagga 119  Q
    |||||||| |||| ||||||| ||||||||||    ||||||||||||| ||| |||||||| |||||| |||||||||| ||||||| || || || ||    
T  16429316 ggtctaaacgataaaattttgaattttgaggggcggagtcccgtaagaagtcccttctaaggtagtcttgatcataaaaatacaaggatgagagttatga 16429217  T
Q  120 agattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcacca 218  Q
    |||||| |||| || ||| ||  ||||||||||||| ||| ||||| ||||||||||||||||||||    ||||||||||||| | |||||||||||||    
T  16429216 agattagtattatcattaaaatgactatccatgttacaaacatgtttagaattggtgttggtgctgtttggattacgtaatccgaactgcatcagcacca 16429117  T
Q  219 tgaaaa 224  Q
    ||||||    
T  16429116 tgaaaa 16429111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 89 - 231
Target Start/End: Complemental strand, 34530390 - 34530247
Alignment:
Q  89 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtcc 187  Q
    |||||||||||||||| || ||||| ||||||||||||||||||||||| ||  |||| |||||||| ||| |||||||||||| ||| ||||| ||| |    
T  34530390 aatcataaaaacacaatgatgaaagttaggaagattaatattgtccttaaaatgactaaccatgttacaaacatgttcagaattagtgctggtgttgttc 34530291  T
Q  188 aaattacgtaatccggattgcatcagcaccatgaaaagaatggt 231  Q
    | |||| ||||| || ||||||| ||||||||||||| ||||||    
T  34530290 agattatgtaattcgaattgcattagcaccatgaaaaaaatggt 34530247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 27494067 - 27494235
Alignment:
Q  56 agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaaa-actatccatgtta 154  Q
    ||||||||||||| ||| ||| ||||||||||| |||  |||||||||||||||   | ||||||||||||||||||||||| ||  |||||||||||||    
T  27494067 agtcccgtaagaagtccattcaaagggagtcttgatcc-aaaaacacaaggacgggggttaggaagattaatattgtccttaaaatgactatccatgtta 27494165  T
Q  155 taaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaa 224  Q
     ||||||||| |||||||||| |||||| ||    || |||||||||| | |||||||||| ||||||||    
T  27494166 caaatatgtttagaattggtgctggtgcagtttggatcacgtaatccgaactgcatcagcatcatgaaaa 27494235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 34530216 - 34530073
Alignment:
Q  81 ggagtcttaatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttgg 179  Q
    |||||||| |||||||||||||||||| ||||| |||||||||||||| |||||||| ||  |||||||| | || ||| |||| || |||||||| ||     
T  34530216 ggagtcttgatcataaaaacacaaggatgaaagttaggaagattaatactgtccttaaaatgactatcca-gctacaaacatgtccaaaattggtgctga 34530118  T
Q  180 tgctgtccaaattacgtaatccggattgcatcagcaccatgaaaa 224  Q
    || ||||   ||||||||||||| | |||||||||||||| ||||    
T  34530117 tgatgtctggattacgtaatccgaactgcatcagcaccataaaaa 34530073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 28445155 - 28445245
Alignment:
Q  89 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttg 178  Q
    ||||||||||||||||||| || || ||||||||||||||||||||||| ||  || || ||||||| ||| |||||||||||||||||||    
T  28445155 aatcataaaaacacaaggatgagagttaggaagattaatattgtccttaaaacgaccatacatgttacaaacatgttcagaattggtgttg 28445245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 235
Target Start/End: Complemental strand, 4650250 - 4650124
Alignment:
Q  109 gaaagctaggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattg 207  Q
    ||||| |||||||||||||||||| |||| ||  ||||||||||| | ||| ||||||| ||||||||||| || | |||  ||||| ||||||  | ||    
T  4650250 gaaagataggaagattaatattgttcttacaatgactatccatgtgacaaacatgttcaaaattggtgttgatgttatccggattacttaatccaaactg 4650151  T
Q  208 catcagcaccatgaaaagaatggtgttt 235  Q
    ||||||||||||||||| ||||||||||    
T  4650150 catcagcaccatgaaaa-aatggtgttt 4650124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 8738931 - 8739021
Alignment:
Q  89 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttg 178  Q
    ||||||||||| ||| ||| || || |||||||||||||||||| |||| ||  ||||||||||||| ||| |||||||||||||||||||    
T  8738931 aatcataaaaatacagggatgagagttaggaagattaatattgttcttaaaatgactatccatgttacaaacatgttcagaattggtgttg 8739021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 224
Target Start/End: Complemental strand, 16429457 - 16429321
Alignment:
Q  89 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtcc 187  Q
    |||||||||||||||||||  | || | ||||||||||||||||||||| ||  ||||| ||||||| ||| |||||||||||||||| || ||  ||      
T  16429457 aatcataaaaacacaaggataagagtttggaagattaatattgtccttaaaacgactattcatgttacaaacatgttcagaattggtgctgatgtagttt 16429358  T
Q  188 aaattacgtaatccggattgcatcagcaccatgaaaa 224  Q
      |||| |||||||| | ||||| |||||||||||||    
T  16429357 ggattaggtaatccgaactgcattagcaccatgaaaa 16429321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 8973555 - 8973642
Alignment:
Q  89 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtg 175  Q
    ||||||||||||||||||| || || ||||||| ||||||||||||||| ||  | ||||||||||| ||| ||||||| ||||||||    
T  8973555 aatcataaaaacacaaggatgagagttaggaaggttaatattgtccttaaaatgattatccatgttacaaacatgttcaaaattggtg 8973642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 253
Target Start/End: Complemental strand, 34440837 - 34440748
Alignment:
Q  166 agaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatg--aaaagaatggtgtttcggaggttttcggattat 253  Q
    |||||||||| |||  |||||  ||||||||||||| ||||||||||||||||||  |||| || ||||||| || ||||||||||||||    
T  34440837 agaattggtgctggcactgtctgaattacgtaatccagattgcatcagcaccatgaaaaaaaaagggtgtttagggggttttcggattat 34440748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 253
Target Start/End: Complemental strand, 26319229 - 26319132
Alignment:
Q  150 tgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaagaatggtgtttcggaggttttcgga 249  Q
    ||||| ||| ||||||||| |||||| ||||||||| |  |||||||||||||||||      |||||||| ||| || ||||||| || ||||||||||    
T  26319229 tgttacaaacatgttcagatttggtgctggtgctgtacggattacgtaatccggatt------gcaccatggaaaaaagggtgtttagggggttttcgga 26319136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 253
Target Start/End: Original strand, 36359604 - 36359692
Alignment:
Q  166 agaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatg-aaaagaatggtgtttcggaggttttcggattat 253  Q
    |||||||||| ||||| ||||   ||||||||||| ||||||||||| ||||||| |||| || ||||||| || ||||||| ||||||    
T  36359604 agaattggtgatggtgttgtctggattacgtaatctggattgcatcaacaccatgaaaaaaaaaggtgtttagggggttttcagattat 36359692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 21070512 - 21070458
Alignment:
Q  118 gaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaatt 171  Q
    |||||||||||||||||||| ||  |||||| |||||| ||||||||||||||||    
T  21070512 gaagattaatattgtccttaaaatgactatctatgttacaaatatgttcagaatt 21070458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 28083330 - 28083400
Alignment:
Q  95 aaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgtt 164  Q
    ||||||| ||||| ||||| ||| |||||||||||||||| || ||  ||||||||||||| |||||||||    
T  28083330 aaaaacagaaggatgaaagttagaaagattaatattgtccctaaaatgactatccatgttacaaatatgtt 28083400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 36359135 - 36359169
Alignment:
Q  190 attacgtaatccggattgcatcagcaccatgaaaa 224  Q
    ||||||||||||| |||||||||||||||||||||    
T  36359135 attacgtaatccgaattgcatcagcaccatgaaaa 36359169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 38641216 - 38641182
Alignment:
Q  190 attacgtaatccggattgcatcagcaccatgaaaa 224  Q
    ||||||||||||||||||||| |||||||||||||    
T  38641216 attacgtaatccggattgcattagcaccatgaaaa 38641182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 6156900 - 6156823
Alignment:
Q  95 aaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 171  Q
    ||||||| ||||| || || |||||||||||||||||||| || ||  ||||||||||||| ||| ||||| ||||||    
T  6156900 aaaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatt 6156823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 29862773 - 29862704
Alignment:
Q  103 aaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 171  Q
    ||||| ||||| |||||||||||||||||||| || ||  ||||||||||||| ||| ||||| ||||||    
T  29862773 aaggatgaaagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatt 29862704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 40613635 - 40613704
Alignment:
Q  103 aaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 171  Q
    ||||| ||||| |||||||||||||| |||||||| || || ||||||||||| ||| ||||||| ||||    
T  40613635 aaggatgaaagttaggaagattaataatgtccttaaaataattatccatgttacaaacatgttcataatt 40613704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 31929078 - 31929146
Alignment:
Q  96 aaaacacaaggacgaaagctaggaagattaatattgtccttagaaaactatccatgttataaatatgtt 164  Q
    |||||| ||||| || || ||||||||||||||||||||| | |  ||||||||||||| ||| |||||    
T  31929078 aaaacagaaggatgagagttaggaagattaatattgtcctaaaatgactatccatgttacaaacatgtt 31929146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 37183565 - 37183631
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagg---gcagtcccgtaagaactcctttctaagggagtc 86  Q
    |||||||||||| ||||||||||||||||||   | ||||||||||||  ||| ||||| |||||||    
T  37183565 ggtctaaatgatggaattttggattttgaggggcggagtcccgtaagatgtcccttctacgggagtc 37183631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 38692567 - 38692633
Alignment:
Q  24 gtctaaatgatagaattttggattttgagg---gcagtcccgtaagaact-cctttctaagggagtc 86  Q
    ||||||| ||||||||||||||||||||||   | ||||||||||||| | |||| |||||||||||    
T  38692567 gtctaaacgatagaattttggattttgaggggcggagtcccgtaagaagtcccttcctaagggagtc 38692633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 8e-67; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 45244671 - 45244456
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaa 120  Q
    |||||||||||| ||||||||||||||||||||  |||| |||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  45244671 ggtctaaatgatggaattttggattttgagggcggagtctcgtaagaagtcctttctaagggagtcttgatcataaaaacacaaggacaaaagctaggaa 45244572  T
Q  121 gattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccat 219  Q
    ||||||||||||||||| ||  |||| |||||||| ||| |||||||||||||||| | |||||||||  |||||||||||| |||||||||||||||||    
T  45244571 gattaatattgtccttaaaatgactaaccatgttacaaacatgttcagaattggtgctcgtgctgtccggattacgtaatccagattgcatcagcaccat 45244472  T
Q  220 gaaaagaatggtgttt 235  Q
    ||||| || |||||||    
T  45244471 gaaaaaaagggtgttt 45244456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 37 - 224
Target Start/End: Complemental strand, 8735453 - 8735263
Alignment:
Q  37 aattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagattaatattgtcc 134  Q
    |||||||||||||||||||  |||| | |||||| | | |||||||| |||||| |||||||||||||||||| ||| |||||||| |||||||||||||    
T  8735453 aattttggattttgagggcggagtctcctaagaagttccttctaaggtagtcttgatcataaaaacacaaggatgaatgctaggaatattaatattgtcc 8735354  T
Q  135 ttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaa 224  Q
    ||| ||  ||||||||||||||||| |||||||||||||||| ||||||||||| |||| ||||||| ||||||||||| |||||||||||    
T  8735353 ttaaaatgactatccatgttataaacatgttcagaattggtgctggtgctgtccgaatttcgtaatctggattgcatcaacaccatgaaaa 8735263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 37 - 224
Target Start/End: Complemental strand, 9087694 - 9087504
Alignment:
Q  37 aattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagattaatattgtcc 134  Q
    |||||||||||||||||||  |||| | |||||| | | |||||||| |||||| |||||||||||||||||| ||| |||||||| |||||||||||||    
T  9087694 aattttggattttgagggcggagtctcctaagaagttccttctaaggtagtcttgatcataaaaacacaaggatgaatgctaggaatattaatattgtcc 9087595  T
Q  135 ttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaa 224  Q
    ||| ||  ||||||||||||||||| |||||||||||||||| ||||||||||| |||| ||||||| ||||||||||| |||||||||||    
T  9087594 ttaaaatgactatccatgttataaacatgttcagaattggtgctggtgctgtccgaatttcgtaatctggattgcatcaacaccatgaaaa 9087504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 45244878 - 45244676
Alignment:
Q  25 tctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaaga 122  Q
    ||||||| || |||||||||||||||||||   ||||||||||||| ||  ||||||  |||  || |||||||||||||||| | |||| |||| ||||    
T  45244878 tctaaataatggaattttggattttgagggtggagtcccgtaagaagtctcttctaaaagaggtttgatcataaaaacacaagtatgaaaactagtaaga 45244779  T
Q  123 ttaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatga 221  Q
    ||||||| ||||||| ||  |||||| |||||||||| |||||||||||||||| ||||  |||||  ||||||||||||||||||||| ||||||||||    
T  45244778 ttaatatcgtccttataatgactatcaatgttataaacatgttcagaattggtgatggtattgtccggattacgtaatccggattgcattagcaccatga 45244679  T
Q  222 aaa 224  Q
    |||    
T  45244678 aaa 45244676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 90 - 224
Target Start/End: Complemental strand, 8735605 - 8735470
Alignment:
Q  90 atcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtcca 188  Q
    ||||| |||||||||||| ||||| ||||||||||||||||||||||| ||  |||||| |||||| ||| ||||||| ||||||||||| || |||||     
T  8735605 atcatgaaaacacaaggatgaaagttaggaagattaatattgtccttaaaatgactatcaatgttacaaacatgttcataattggtgttgatgttgtccg 8735506  T
Q  189 aattacgtaatccggattgcatcagcaccatgaaaa 224  Q
     |||||||||||| || ||||| |||||||||||||    
T  8735505 gattacgtaatccagactgcattagcaccatgaaaa 8735470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 90 - 224
Target Start/End: Complemental strand, 9087846 - 9087711
Alignment:
Q  90 atcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtcca 188  Q
    ||||| |||||||||||| ||||| ||||||||||||||||||||||| ||  |||||| |||||| ||| ||||||| ||||||||||| || |||||     
T  9087846 atcatgaaaacacaaggatgaaagttaggaagattaatattgtccttaaaatgactatcaatgttacaaacatgttcataattggtgttgatgttgtccg 9087747  T
Q  189 aattacgtaatccggattgcatcagcaccatgaaaa 224  Q
     |||||||||||| || ||||| |||||||||||||    
T  9087746 gattacgtaatccagactgcattagcaccatgaaaa 9087711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 27 - 235
Target Start/End: Complemental strand, 32025254 - 32025054
Alignment:
Q  27 taaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagatt 124  Q
    |||| ||| |||||| ||||||||||||   |||||| |||||| ||| ||||||||||||||| ||||||||||||          ||||| |||||||    
T  32025254 taaacgatggaatttgggattttgagggtggagtcccataagaa-tcccttctaagggagtcttgatcataaaaaca----------agctatgaagatt 32025166  T
Q  125 aatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaa 223  Q
    ||||||||||||| ||  |||||  || ||| ||| |||||||||||||||| ||||| ||||| |||||||||||||| | |||||||| |||||||||    
T  32025165 aatattgtccttaaaacgactatttatattacaaacatgttcagaattggtgctggtgttgtccgaattacgtaatccgaactgcatcaggaccatgaaa 32025066  T
Q  224 agaatggtgttt 235  Q
    | ||||||||||    
T  32025065 aaaatggtgttt 32025054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 166 - 253
Target Start/End: Complemental strand, 48304131 - 48304044
Alignment:
Q  166 agaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaagaatggtgtttcggaggttttcggattat 253  Q
    |||||||||| ||||||||||   ||||||||||||||||||||||| ||||||||||| |||||||||  || ||||||||||||||    
T  48304131 agaattggtgatggtgctgtctggattacgtaatccggattgcatcaccaccatgaaaaaaatggtgttgagggggttttcggattat 48304044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 33842020 - 33842108
Alignment:
Q  89 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgt 176  Q
    ||||||||||||||||||| || || || ||| |||||||||||||||| ||  ||||||||| ||| ||| ||||| | |||||||||    
T  33842020 aatcataaaaacacaaggatgagagttacgaacattaatattgtccttaaaatgactatccatattacaaacatgtttaaaattggtgt 33842108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 44085434 - 44085498
Alignment:
Q  160 atgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaa 224  Q
    ||||| |||||||||| | ||| ||||   ||||||||||| |||||||||||||||||||||||    
T  44085434 atgtttagaattggtgcttgtgttgtctggattacgtaatctggattgcatcagcaccatgaaaa 44085498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 29048705 - 29048637
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagg---gcagtcccgtaagaactcctttctaagggagtctt 88  Q
    |||||||| ||| ||||||||||||||||||   | |||||||||| || ||||||||| |||||||||    
T  29048705 ggtctaaacgatggaattttggattttgaggggcggagtcccgtaataagtcctttctacgggagtctt 29048637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 48304593 - 48304559
Alignment:
Q  190 attacgtaatccggattgcatcagcaccatgaaaa 224  Q
    ||||||||||||| |||||||||||||||||||||    
T  48304593 attacgtaatccgaattgcatcagcaccatgaaaa 48304559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 47979982 - 47980035
Alignment:
Q  119 aagattaatattgtccttagaaa-actatccatgttataaatatgttcagaatt 171  Q
    ||||||||||||||||||| ||  |||||| |||||||||||||||||| ||||    
T  47979982 aagattaatattgtccttaaaatgactatctatgttataaatatgttcaaaatt 47980035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 501094 - 501170
Alignment:
Q  96 aaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 171  Q
    |||||| ||||| || ||||||||||||||||||||||| || ||  ||||||||| ||| ||| ||||| ||||||    
T  501094 aaaacagaaggatgagagctaggaagattaatattgtccataaaatgactatccattttacaaacatgtttagaatt 501170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 27 - 253
Target Start/End: Original strand, 43319073 - 43319302
Alignment:
Q  27 taaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagatt 124  Q
    |||||||| ||||||||||||||||||||  ||||||||||||| ||  |||||||| |||||| |||||||||||||||||| |||||||| |||||||    
T  43319073 taaatgatggaattttggattttgagggcggagtcccgtaagaagtctcttctaaggaagtcttgatcataaaaacacaaggatgaaagctatgaagatt 43319172  T
Q  125 aatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaa 223  Q
    |||||| |||||| ||  |||||| |||||| ||| |||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||    
T  43319173 aatattatccttaaaatgactatcaatgttacaaacatgttcagaattggtgatggtgctgtccggattacgtaatccggattgcatcagcaccatgaaa 43319272  T
Q  224 agaatggtgtttcggaggttttcggattat 253  Q
    | ||  |||||| || ||||||||||||||    
T  43319273 aaaagagtgtttagggggttttcggattat 43319302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 43318859 - 43319062
Alignment:
Q  24 gtctaaatgatagaattttggattttgagggcag--tcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaag 121  Q
    |||||||||||  |||||||||||||||||||||  ||||||||||| ||  |||||||||| |||| |||||||||||||||||| ||||| |||||||    
T  43318859 gtctaaatgatgaaattttggattttgagggcagagtcccgtaagaagtctcttctaagggaatcttgatcataaaaacacaaggatgaaagttaggaag 43318958  T
Q  122 attaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatg 220  Q
    ||||||||||| |||| ||  |||||| |||||| ||| |||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||    
T  43318959 attaatattgttcttaaaatgactatcaatgttacaaacatgttcagaattggtgctggtgttgtccagattacgtaatccggattgcatcagcaccatg 43319058  T
Q  221 aaaa 224  Q
    ||||    
T  43319059 aaaa 43319062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 9445973 - 9446172
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaa 120  Q
    |||||||| |||  |||||||||||||||||||  ||||||||||||| ||| ||||||||||||||| |||||||||| ||||||| |||||||| |||    
T  9445973 ggtctaaacgatgaaattttggattttgagggcggagtcccgtaagaaatcccttctaagggagtcttgatcataaaaatacaaggatgaaagctaagaa 9446072  T
Q  121 gattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccat 219  Q
    ||||||||||||||||| ||  ||||||||||||||||| |||||||||||||||| |||| |||| |  ||||||||||||| | ||||||||||||||    
T  9446073 gattaatattgtccttaaaatgactatccatgttataaacatgttcagaattggtgctggtactgttcggattacgtaatccgaactgcatcagcaccat 9446172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 800677 - 800906
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagggcag--tcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaa 120  Q
    |||||||| ||| ||||||||||||||||||||||  ||||||||||| ||| ||||||||||||||| |||||||||| |||||||  ||||||| |||    
T  800677 ggtctaaacgatggaattttggattttgagggcagagtcccgtaagaagtcccttctaagggagtcttgatcataaaaatacaaggataaaagctaagaa 800776  T
Q  121 gattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccat 219  Q
    |||| |||||||||||| ||  ||||||||||||||||| |||||||||||||||| |||||| ||||   ||||||||||||||   || || ||||||    
T  800777 gatt-atattgtccttaaaatgactatccatgttataaacatgttcagaattggtgctggtgcagtccgcgttacgtaatccggacatcaccaacaccat 800875  T
Q  220 gaaaagaatggtgtttcggaggttttcggatt 251  Q
     |||| |||||||||| || ||| ||||||||    
T  800876 -aaaaaaatggtgtttagggggtgttcggatt 800906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 89 - 224
Target Start/End: Original strand, 800538 - 800674
Alignment:
Q  89 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtcc 187  Q
    ||||||||||||||||||| || || |||||| |||||||||||||| | ||  |||||||||| || ||| |||||  ||||||||||||||| |||||    
T  800538 aatcataaaaacacaaggatgagagttaggaaaattaatattgtcctaaaaatgactatccatgctacaaacatgttttgaattggtgttggtgttgtcc 800637  T
Q  188 aaattacgtaatccggattgcatcagcaccatgaaaa 224  Q
      ||||||||||||| | |||||||||||||| ||||    
T  800638 ggattacgtaatccgaactgcatcagcaccataaaaa 800674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 201
Target Start/End: Original strand, 9445832 - 9445945
Alignment:
Q  89 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtcc 187  Q
    ||||||||||||||||||| || || |||||||||||| ||| |||||| ||  |||||||||| || ||| ||||| |||||||||| ||||| |||||    
T  9445832 aatcataaaaacacaaggatgagagttaggaagattaacattctccttaaaatgactatccatgctacaaagatgtttagaattggtgctggtgttgtcc 9445931  T
Q  188 aaattacgtaatcc 201  Q
      ||||||||||||    
T  9445932 ggattacgtaatcc 9445945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 24471323 - 24471379
Alignment:
Q  150 tgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggatt 206  Q
    ||||| ||| ||||||||||||| || ||||||||||| ||||||||||||||||||    
T  24471323 tgttacaaacatgttcagaattgatgctggtgctgtccgaattacgtaatccggatt 24471379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 42546342 - 42546277
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtc 86  Q
    |||||||| ||| ||||||||||||||||||||  ||||||||||||| | | |||||||||||||    
T  42546342 ggtctaaacgatggaattttggattttgagggcggagtcccgtaagaagttccttctaagggagtc 42546277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 38950385 - 38950322
Alignment:
Q  190 attacgtaatccggattgcatcagcaccatgaaaagaatggtgtttcggaggttttcggattat 253  Q
    ||||||||||||| ||||||||| ||||||||||| ||  |||||| ||  |||||||||||||    
T  38950385 attacgtaatccgaattgcatcaacaccatgaaaaaaagagtgtttagggagttttcggattat 38950322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 38950867 - 38950833
Alignment:
Q  190 attacgtaatccggattgcatcagcaccatgaaaa 224  Q
    ||||||||||||| |||||||||||||||||||||    
T  38950867 attacgtaatccgaattgcatcagcaccatgaaaa 38950833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 41584618 - 41584694
Alignment:
Q  96 aaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 171  Q
    |||||| ||||| || || |||||||||||||||||||| || ||  ||||||||||||| ||| ||||| ||||||    
T  41584618 aaaacagaaggatgagagttaggaagattaatattgtccataaaatgactatccatgttacaaacatgtttagaatt 41584694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 27 - 253
Target Start/End: Original strand, 9847297 - 9847526
Alignment:
Q  27 taaatgatagaattttggattttgagggcag--tcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagatt 124  Q
    |||||||| ||||||||||||||||||||||  ||||||||||| ||  |||||||| |||||| |||||||||||||||||| ||||  ||||||||||    
T  9847297 taaatgatggaattttggattttgagggcagagtcccgtaagaagtctcttctaaggaagtcttgatcataaaaacacaaggatgaaatttaggaagatt 9847396  T
Q  125 aatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaa 223  Q
    ||||||||||||| ||  |||||| | |||| ||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  9847397 aatattgtccttaaaatgactatcgacgttacaaatatgtttagaattggtgttggtgctgtccagattacgtaatccagattgcatcagcaccatgaaa 9847496  T
Q  224 agaatggtgtttcggaggttttcggattat 253  Q
    | || ||||||| |  ||| ||||||||||    
T  9847497 aaaaaggtgtttggatggtgttcggattat 9847526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 9847085 - 9847289
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaa 120  Q
    |||||||||||| | ||||||||||||||| ||  ||||||||||||| ||  ||||||||||||||| |||||||||||||||||| ||||| || |||    
T  9847085 ggtctaaatgatgggattttggattttgagagcggagtcccgtaagaagtctcttctaagggagtcttgatcataaaaacacaaggatgaaagttatgaa 9847184  T
Q  121 gattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccat 219  Q
    ||||||||||||||||| ||  |||||| |||||| ||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  9847185 gattaatattgtccttaaaatgactatcaatgttacaaacatgttcagaattggtgttggtgttgtccagattacgtaatccggattgcatcagcaccat 9847284  T
Q  220 gaaaa 224  Q
     ||||    
T  9847285 aaaaa 9847289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 235
Target Start/End: Complemental strand, 25715633 - 25715431
Alignment:
Q  27 taaatgatagaattttggattttgagggcag--tcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagatt 124  Q
    ||||||||||||||||||||||||| |||||  ||||||||||| ||  ||||| || |||||| |||||||||||||||||| |||||||| ||| |||    
T  25715633 taaatgatagaattttggattttgatggcagagtcccgtaagaagtctcttctacggaagtctttatcataaaaacacaaggatgaaagctacgaatatt 25715534  T
Q  125 aatattgtccttagaaaactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaa 224  Q
    ||||||||||||  ||||  |       |||||| ||||| |||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||    
T  25715533 aatattgtcctt--aaaatga------ctataaacatgtttagaattggtgttggtgttgtccggattacgtaatccggattgcatcagcaccatgaaaa 25715442  T
Q  225 gaatggtgttt 235  Q
     ||||||||||    
T  25715441 aaatggtgttt 25715431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 25715835 - 25715633
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaa 120  Q
    |||||||||||| ||||||||||||||||||||  |||||| |||||| ||  ||||||||||||||| ||||||||||||||||||       || |||    
T  25715835 ggtctaaatgatggaattttggattttgagggcggagtcccataagaaatctcttctaagggagtcttgatcataaaaacacaagga------ttatgaa 25715742  T
Q  121 gattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccat 219  Q
    ||||||||||||| ||| ||  |||||| |||||| ||| ||||||||| |||||| ||     | ||  |||||||||||||||||||||| |||||||    
T  25715741 gattaatattgtctttaaaatgactatcaatgttacaaacatgttcagagttggtgctg-----ggccggattacgtaatccggattgcatctgcaccat 25715647  T
Q  220 gaaaagaatggtgt 233  Q
    ||||| || |||||    
T  25715646 gaaaaaaagggtgt 25715633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 224
Target Start/End: Original strand, 34519466 - 34519614
Alignment:
Q  77 taagggagtcttaatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtg 175  Q
    ||||||| |||| || | ||||||| ||||| ||||| ||||||||||||||||||||||| ||  | ||||||||||| ||| ||||||||||||| ||    
T  34519466 taagggaatcttgattagaaaaacataaggatgaaagttaggaagattaatattgtccttaaaatgattatccatgttacaaacatgttcagaattgatg 34519565  T
Q  176 ttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaa 224  Q
    ||||||| ||    ||||||||||||||| | |||||||||||||||||    
T  34519566 ttggtgcagtttggattacgtaatccggactacatcagcaccatgaaaa 34519614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 224
Target Start/End: Original strand, 17766770 - 17766906
Alignment:
Q  89 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtcc 187  Q
    ||||||||||||||||||| || || ||||||||||||||||||||||| ||  |||||| |||||| ||| ||||||| ||||||||||| ||  ||      
T  17766770 aatcataaaaacacaaggatgagagttaggaagattaatattgtccttaaaatgactatcaatgttacaaacatgttcaaaattggtgttgatgaagttt 17766869  T
Q  188 aaattacgtaatccggattgcatcagcaccatgaaaa 224  Q
    | |||| |||||||| | ||||||| |||||| ||||    
T  17766870 agattatgtaatccgaactgcatcaacaccataaaaa 17766906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 25217553 - 25217619
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagg---gcagtcccgtaagaactcctttctaagggagtc 86  Q
    |||||||| ||||||||||||||||||||||   | ||||||||||||| ||| ||||| |||||||    
T  25217553 ggtctaaacgatagaattttggattttgaggggcggagtcccgtaagaagtcccttctatgggagtc 25217619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 33367068 - 33367019
Alignment:
Q  160 atgttcagaattggtgttggtgctgtccaaattacgtaatccggattgca 209  Q
    |||||||||||||||| ||||||| |||  |||||||||||||| |||||    
T  33367068 atgttcagaattggtgctggtgctatccggattacgtaatccggtttgca 33367019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 41203134 - 41203203
Alignment:
Q  96 aaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgtt 164  Q
    |||||| ||||| ||||| |||||||||||||||||||| || ||  ||||||||||||| ||| |||||    
T  41203134 aaaacagaaggatgaaagttaggaagattaatattgtccataaaatgactatccatgttacaaacatgtt 41203203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 42894752 - 42894686
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagg---gcagtcccgtaagaactcctttctaagggagtc 86  Q
    |||||||| ||| ||||||||||||||||||   | ||||||||||||| | | |||||||||||||    
T  42894752 ggtctaaacgatggaattttggattttgaggggcggagtcccgtaagaagttccttctaagggagtc 42894686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 44465519 - 44465585
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagg---gcagtcccgtaagaactcctttctaagggagtc 86  Q
    |||||||| ||| ||||||||||||||||||   | ||||||||||||| ||| ||||| |||||||    
T  44465519 ggtctaaaagatggaattttggattttgaggggcggagtcccgtaagaagtcccttctaggggagtc 44465585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 37 - 253
Target Start/End: Complemental strand, 41530942 - 41530723
Alignment:
Q  37 aattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagattaatattgtcc 134  Q
    |||||||||||||||||||  ||||||||||||| ||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41530942 aattttggattttgagggcggagtcccgtaagaagtctcttctaagggagtcttgatcataaaaacacaaggacgaaagctaggaagattaatattgtcc 41530843  T
Q  135 ttagaaa--actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaagaatggtg 232  Q
    || ||||  ||||||||||||| ||| ||||||| |||||||| ||||| |||||  |||||||||||||||||||| |||||||||||||| || |||     
T  41530842 tt-gaaatgactatccatgttacaaacatgttcaaaattggtgatggtgatgtccggattacgtaatccggattgcaacagcaccatgaaaaaaagggtt 41530744  T
Q  233 tttcggaggttttcggattat 253  Q
    ||| || ||| ||| ||||||    
T  41530743 tttagggggtgttcagattat 41530723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 24627854 - 24627622
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaa 120  Q
    |||||||||||||||||||||||||||||||||  ||| | ||||||| ||  ||||||||||||||| |||||||||||||||| |  |||||||||||    
T  24627854 ggtctaaatgatagaattttggattttgagggcggagttctgtaagaagtctcttctaagggagtcttgatcataaaaacacaagaat-aaagctaggaa 24627756  T
Q  121 gattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccat 219  Q
    ||||||||||||||||| ||  ||||||||||||| ||| || ||||||||||||| ||||| |||||  ||||||||||||||||||||||||||||||    
T  24627755 gattaatattgtccttaaaatgactatccatgttacaaacatattcagaattggtgctggtgttgtccggattacgtaatccggattgcatcagcaccat 24627656  T
Q  220 g--aaaagaatggtgtttcggaggttttcggatt 251  Q
    |  |||| |||||||||| || ||| ||||||||    
T  24627655 gaaaaaaaaatggtgtttagggggtattcggatt 24627622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 26 - 224
Target Start/End: Complemental strand, 24628060 - 24627859
Alignment:
Q  26 ctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagat 123  Q
    ||||||||||||||||||||||||||||||  |||| |||||||| ||  ||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  24628060 ctaaatgatagaattttggattttgagggcggagtctcgtaagaagtctcttctaagggagtcttgatcataaaaacacaaggatgaaagctaggaagat 24627961  T
Q  124 taatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaa 222  Q
    |||||||||| ||| ||  |||||| |||||| ||| ||||||||||||||||||| || | ||| |||||| ||||||||| ||||| | |||||||||    
T  24627960 taatattgtcattaaaatgactatcaatgttacaaacatgttcagaattggtgttgatgttatccgaattacttaatccggactgcattaacaccatgaa 24627861  T
Q  223 aa 224  Q
    ||    
T  24627860 aa 24627859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 23 - 235
Target Start/End: Original strand, 31234605 - 31234821
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagggc--agtcccg--taagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctagg 118  Q
    |||||||| ||| ||||||||||||||||||||  |||||||  |||||| ||| ||||||||||||||| |||||||||| ||||||| |||||||| |    
T  31234605 ggtctaaacgatggaattttggattttgagggcggagtcccgcgtaagaagtcccttctaagggagtcttgatcataaaaatacaaggatgaaagctaag 31234704  T
Q  119 aagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcacc 217  Q
    ||||||||||||||||||| ||  || ||||||||||  || |||||||||||||||| | |||||||||  ||||||||||||| | |||||||| |||    
T  31234705 aagattaatattgtccttaaaatgacgatccatgttacgaacatgttcagaattggtgctagtgctgtccggattacgtaatccgaactgcatcagtacc 31234804  T
Q  218 atgaaaagaatggtgttt 235  Q
    ||||||| ||||||||||    
T  31234805 atgaaaa-aatggtgttt 31234821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 10833407 - 10833575
Alignment:
Q  37 aattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagattaatattgtcc 134  Q
    ||||||||||||||| |||  ||||| |||| || ||| ||||||||||||||| || ||||||||| ||||| ||||| ||||||||||||||||||||    
T  10833407 aattttggattttgatggcggagtcctgtaaaaagtcccttctaagggagtcttgattataaaaacaaaaggatgaaagttaggaagattaatattgtcc 10833506  T
Q  135 ttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccg 202  Q
    ||| ||  ||||||||||||| ||| |||||||||||||||| |||||| ||||| |||| | ||||||    
T  10833507 ttaaaatgactatccatgttacaaacatgttcagaattggtgctggtgcagtccagattatgaaatccg 10833575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 33472352 - 33472138
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagggc---agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctagga 119  Q
    |||||||| |||  ||||||| ||||||||||    ||||||||||||| ||  ||||||||||||||| |||  ||||||||||||| || || |||||    
T  33472352 ggtctaaacgatgaaattttgaattttgaggggcgtagtcccgtaagaagtctcttctaagggagtcttgatcc-aaaaacacaaggatgagagttagga 33472254  T
Q  120 agattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcacca 218  Q
    |||||||||||||||||| ||  ||||||||||||| ||| ||||| |||||||||| | |||| ||    |||| ||||| || | |||||||||||||    
T  33472253 agattaatattgtccttaaaatgactatccatgttacaaacatgttaagaattggtgcttgtgcagtttggattatgtaattcgaactgcatcagcacca 33472154  T
Q  219 tgaaaagaatggtgttt 235  Q
    | |||| ||||||||||    
T  33472153 t-aaaaaaatggtgttt 33472138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 143 - 235
Target Start/End: Original strand, 7970993 - 7971085
Alignment:
Q  143 ctatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaagaatggtgttt 235  Q
    |||||||||||| ||| ||||||||||||| || |||||||||||  ||||||||||||||||||||||||||||||| ||| || |||||||    
T  7970993 ctatccatgttacaaacatgttcagaattgatgctggtgctgtccggattacgtaatccggattgcatcagcaccatggaaaaaagggtgttt 7971085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 89 - 220
Target Start/End: Original strand, 31234464 - 31234596
Alignment:
Q  89 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtcc 187  Q
    ||||||||||||||| ||| |  || ||||||||||||||||||||||| ||  ||||||||||||| |||||||||||||||||||| ||||| ||| |    
T  31234464 aatcataaaaacacatggatgggagttaggaagattaatattgtccttaaaatgactatccatgttacaaatatgttcagaattggtgctggtgttgttc 31234563  T
Q  188 aaattacgtaatccggattgcatcagcaccatg 220  Q
      ||||||||||||| | ||||| | |||||||    
T  31234564 ggattacgtaatccgaactgcattaacaccatg 31234596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 224
Target Start/End: Complemental strand, 33472491 - 33472355
Alignment:
Q  89 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtcc 187  Q
    ||||||||||||||||||| || || ||||||||||||||||||||||| ||  ||||||||||||| ||| |||||||||||||||| || ||| ||      
T  33472491 aatcataaaaacacaaggatgatagttaggaagattaatattgtccttaaaatgactatccatgttacaaacatgttcagaattggtgatgatgcagttt 33472392  T
Q  188 aaattacgtaatccggattgcatcagcaccatgaaaa 224  Q
      |||| |||||| | | |||||||||| ||||||||    
T  33472391 ggattatgtaatctgaactgcatcagcatcatgaaaa 33472355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 171
Target Start/End: Complemental strand, 9845465 - 9845316
Alignment:
Q  24 gtctaaatgatagaattttggattttgagggc---agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaa 120  Q
    ||||||| ||| |||||||  ||||||||||    ||||||||||||| ||||| |||||| |||||| |||  ||||| | |||||||| || ||||||    
T  9845465 gtctaaacgatggaattttaaattttgagggatggagtcccgtaagaagtcctt-ctaaggaagtcttgatcc-aaaaatataaggacgagagttaggaa 9845368  T
Q  121 gattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 171  Q
    ||||||||||||||||| ||  ||||||||||||| ||| ||||||| ||||    
T  9845367 gattaatattgtccttaaaatgactatccatgttacaaacatgttcataatt 9845316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 36403749 - 36403809
Alignment:
Q  56 agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagcta 116  Q
    ||||||||||||| |||||| ||| |||||||| |||||||||||||||  ||||||||||    
T  36403749 agtcccgtaagaaatcctttataaaggagtcttgatcataaaaacacaaaaacgaaagcta 36403809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 36404208 - 36404261
Alignment:
Q  199 tccggattgcatcagcaccatgaaaagaatggtgtttcggaggttttcggattat 253  Q
    |||||||||||||||||||||||||| || ||||||| ||| |||||||||||||    
T  36404208 tccggattgcatcagcaccatgaaaaaaagggtgtttagga-gttttcggattat 36404261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 41531003 - 41530964
Alignment:
Q  185 tccaaattacgtaatccggattgcatcagcaccatgaaaa 224  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  41531003 tccagattacgtaatccggattgcattagcaccatgaaaa 41530964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 8885236 - 8885302
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagg---gcagtcccgtaagaactcctttctaagggagtc 86  Q
    |||||||||||| ||||||||||||||||||   | ||||| ||||||| ||| ||||| |||||||    
T  8885236 ggtctaaatgatggaattttggattttgaggggcggagtcctgtaagaagtcccttctacgggagtc 8885302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 8885406 - 8885482
Alignment:
Q  96 aaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 171  Q
    |||||| ||||| || || |||||||||||||||||||| || ||  ||||||||||||| ||| ||||| ||||||    
T  8885406 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatt 8885482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 44106429 - 44106353
Alignment:
Q  96 aaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 171  Q
    |||||| ||||| || || |||||||||||||||||||| | |||  ||||||||||||| ||| ||||| ||||||    
T  44106429 aaaacagaaggatgagagttaggaagattaatattgtccatggaatgactatccatgttacaaacatgtttagaatt 44106353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 23 - 235
Target Start/End: Original strand, 5731063 - 5731277
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaa 120  Q
    |||||||||||| |||||||||||||||||||   |||| |||||||| ||| ||||||||||||||| || ||||||| ||||||| |||||||| |||    
T  5731063 ggtctaaatgatggaattttggattttgagggtggagtctcgtaagaagtcccttctaagggagtcttgattataaaaatacaaggatgaaagctaagaa 5731162  T
Q  121 gattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccat 219  Q
    ||||||||||||||||  ||  ||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||  ||| |||||||||    
T  5731163 gattaatattgtccttcaaatgactatccatgttataaacatgttcagaattggtgttggtgctgtcccgattacgtaatccggacagcaccagcaccat 5731262  T
Q  220 gaaaagaatggtgttt 235  Q
    ||||| ||||||||||    
T  5731263 gaaaa-aatggtgttt 5731277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 8214236 - 8214375
Alignment:
Q  89 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtcc 187  Q
    |||| ||||||||||| || || || ||||||||||||||||||||||||||  ||||||||||||  ||| ||||||||||||||||||| ||| ||      
T  8214236 aatcgtaaaaacacaatgatgagagttaggaagattaatattgtccttagaatgactatccatgttgcaaacatgttcagaattggtgttgatgcagttt 8214335  T
Q  188 aaattacgtaatccggattgcatcagcaccatgaaaagaa 227  Q
     |||||||||||||| | ||||| |||||| |||||||||    
T  8214336 gaattacgtaatccgaactgcattagcaccgtgaaaagaa 8214375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 8214378 - 8214578
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagggc---agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctagga 119  Q
    |||||||| ||| |||||||||||| ||||||    |||| |||||||| ||| ||||||||||| ||| ||||||||||||| |||| || || |||||    
T  8214378 ggtctaaaagatggaattttggattgtgaggggcgaagtctcgtaagaagtcccttctaagggagccttgatcataaaaacacgaggatgagagttagga 8214477  T
Q  120 agattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcacca 218  Q
    |||||||||||||||||| ||  || ||| |||||| ||| ||||||| |||| ||  |||||| ||    |||||||||| || | |||||||||||||    
T  8214478 agattaatattgtccttaaaatgacaatcgatgttacaaacatgttcataattcgttctggtgcagtttggattacgtaattcgaactgcatcagcacca 8214577  T
Q  219 t 219  Q
    |    
T  8214578 t 8214578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 173
Target Start/End: Complemental strand, 16278388 - 16278234
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagg---gcagtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctagga 119  Q
    |||||||| |||  ||||||||||||||| |   | ||||||||||||| ||| ||||||||||||||| |||||||||||||||||| |  ||  | ||    
T  16278388 ggtctaaacgatgaaattttggattttgatgtgcggagtcccgtaagaagtcccttctaagggagtcttgatcataaaaacacaaggatgggagtaaaga 16278289  T
Q  120 agattaatattgtccttagaa-aactatccatgttataaatatgttcagaattgg 173  Q
     ||||||||||||||||| ||  ||||||||||||| ||| || || ||||||||    
T  16278288 tgattaatattgtccttaaaatgactatccatgttacaaacatattaagaattgg 16278234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 231
Target Start/End: Original strand, 5730922 - 5731065
Alignment:
Q  89 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtcc 187  Q
    |||||||||||||||||   || || ||| ||||||||||||||  ||| ||  ||||| |||| || ||| ||||| ||||||| || ||||| |||||    
T  5730922 aatcataaaaacacaagattgagagttagaaagattaatattgtatttaaaatgactattcatgctacaaacatgtttagaattgttgctggtggtgtcc 5731021  T
Q  188 aaattacgtaatccggattgcatcagcaccatgaaaagaatggt 231  Q
      ||||||||||||| | |||| || ||||||| ||| ||||||    
T  5731022 tgattacgtaatccgaactgcaacatcaccatggaaaaaatggt 5731065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 7115053 - 7115121
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagggcag---tcccgtaagaactcctttctaagggagtctt 88  Q
    ||||||||  || ||||||||||||||||||| ||   ||||||||||| ||| |||||||||||||||    
T  7115053 ggtctaaacaatggaattttggattttgagggaaggagtcccgtaagaagtcccttctaagggagtctt 7115121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 48776183 - 48776240
Alignment:
Q  115 taggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaatt 171  Q
    |||||||||||||||| |||||| ||  ||||||||||||||||| ||||||| ||||    
T  48776183 taggaagattaatattatccttaaaatcactatccatgttataaacatgttcaaaatt 48776240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 9152002 - 9151926
Alignment:
Q  96 aaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 171  Q
    |||||| ||||| || || |||||||||||||||||||| || ||  ||||||||||||| ||| ||||| ||||||    
T  9152002 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatt 9151926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 9152166 - 9152100
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagg---gcagtcccgtaagaactcctttctaagggagtc 86  Q
    |||||||| ||| ||||||||||||||||||   | ||||||||||||| ||| ||||| |||||||    
T  9152166 ggtctaaacgatggaattttggattttgaggggcggagtcccgtaagaagtcccttctaggggagtc 9152100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 28230421 - 28230497
Alignment:
Q  96 aaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 171  Q
    |||||| ||||| || || |||||||||||||||||||| || ||  ||||||||||||| ||| ||||| ||||||    
T  28230421 aaaacagaaggatgagagttaggaagattaatattgtccataaaatgactatccatgttacaaacatgtttagaatt 28230497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 42925424 - 42925490
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagg---gcagtcccgtaagaactcctttctaagggagtc 86  Q
    |||||||| ||| ||||||||||||||||||   | |||||| |||||| ||| |||||||||||||    
T  42925424 ggtctaaacgatggaattttggattttgaggggcggagtcccataagaagtcccttctaagggagtc 42925490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 9e-42; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 37 - 233
Target Start/End: Complemental strand, 17501348 - 17501144
Alignment:
Q  37 aattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagattaatattgtcc 134  Q
    ||||||||||||||| |||  |||||||||| || ||| |||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  17501348 aattttggattttgatggcggagtcccgtaaaaagtcccttctaaaggagtcttgatcataaaaacacaaggatgaaagctaggaagattaatattgtcc 17501249  T
Q  135 ttaga------aaactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaagaat 228  Q
    ||| |      | ||||||||||||| ||| |||||||||||||||  || ||||||||  ||||||||||||| | ||||| ||||||||||||| ||     
T  17501248 ttaaaatgactatactatccatgttacaaacatgttcagaattggtcctgatgctgtccggattacgtaatccgaactgcattagcaccatgaaaaaaag 17501149  T
Q  229 ggtgt 233  Q
    |||||    
T  17501148 ggtgt 17501144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 17501144 - 17500967
Alignment:
Q  27 taaatgatagaattttggattttgagggc--agtccc-gtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagat 123  Q
    |||||||| |||||||||||||||| |||  |||||| ||||||| ||||||||||||||| ||  |||||||||||||||||| ||||  |||||||||    
T  17501144 taaatgatggaattttggattttgatggcggagtccccgtaagaagtcctttctaagggagcctcgatcataaaaacacaaggatgaaaattaggaagat 17501045  T
Q  124 taatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatc 200  Q
    ||||| |||||||| ||  ||||| ||||||| ||| ||||||||| |||||| ||||| |||||  |||||||||||    
T  17501044 taataatgtccttaaaatgactattcatgttacaaacatgttcagatttggtgctggtgttgtccggattacgtaatc 17500967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 2539657 - 2539581
Alignment:
Q  96 aaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 171  Q
    |||||| ||||| || || |||||||||||||||||||| || ||  ||||||||||||| ||| ||||||||||||    
T  2539657 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgttcagaatt 2539581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 54
Target Start/End: Original strand, 8120160 - 8120191
Alignment:
Q  23 ggtctaaatgatagaattttggattttgaggg 54  Q
    ||||||||||||||||||||||||||||||||    
T  8120160 ggtctaaatgatagaattttggattttgaggg 8120191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 21514815 - 21514880
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagg---gcagtcccgtaagaactcctttctaagggagt 85  Q
    |||||||| ||| ||||||||||||||||||   | ||||||||||||| ||| ||||||||||||    
T  21514815 ggtctaaacgatggaattttggattttgaggggcggagtcccgtaagaagtcccttctaagggagt 21514880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 4508255 - 4508331
Alignment:
Q  96 aaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 171  Q
    |||||| ||||| ||||| |||||||||||||||||||| || ||  ||||||||| ||| ||| ||||| ||||||    
T  4508255 aaaacagaaggatgaaagttaggaagattaatattgtccctaaaatgactatccatattacaaacatgtttagaatt 4508331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 25140597 - 25140797
Alignment:
Q  27 taaatgatagaattttggattttgagggcag--tcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagatt 124  Q
    |||| ||| |||||||||||||||| ||| |  ||||| ||||| | | ||||||||||||||| ||||||||||| |||||| ||||||||||||||||    
T  25140597 taaacgatggaattttggattttgatggcggaatcccgcaagaagttccttctaagggagtcttgatcataaaaacccaaggatgaaagctaggaagatt 25140696  T
Q  125 aatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaa 223  Q
    ||||||||||| | ||  ||||||||||||| ||| |||||||||||||||| || |||||| |  ||||||||||||| | ||||| ||||||||||||    
T  25140697 aatattgtcctcaaaatgactatccatgttacaaacatgttcagaattggtgctgatgctgttcggattacgtaatccgaactgcattagcaccatgaaa 25140796  T
Q  224 a 224  Q
    |    
T  25140797 a 25140797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 25140835 - 25140961
Alignment:
Q  56 agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgtta 154  Q
    |||| |||||||| ||| ||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||| ||  |||||||||||||    
T  25140835 agtctcgtaagaagtcccttctaagggagtcttgatcataaaaacacaaggatcaaagctaggaagattaatattgtccttaaaatgactatccatgtta 25140934  T
Q  155 taaatatgttcagaattggtgttggtg 181  Q
     ||| ||||||| ||||| || |||||    
T  25140935 caaacatgttcaaaattgatgctggtg 25140961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 7794205 - 7794296
Alignment:
Q  144 tatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaagaatggtgttt 235  Q
    ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| |||  ||| |||||||||||||| ||||||||||    
T  7794205 tatccatgttataaatatgttcaaaattggtgttggtgttgtccgaattacgtaatctggacagcaccagcaccatgaaaaaaatggtgttt 7794296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 7817361 - 7817451
Alignment:
Q  144 tatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaagaatggtgttt 235  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||   || |||||||||||||| ||||||||||    
T  7817361 tatccatgttataaacatgttcagaattggtgttggtgctgtccagattacgtaatctggacatcaccagcaccatgaaaa-aatggtgttt 7817451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 42660253 - 42660435
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaa 120  Q
    |||||| ||| | |||||||||||||||||||   |||| | |||||| ||  || ||| |||||||| |||||||||| |||| || ||||||||||||    
T  42660253 ggtctacatgttggaattttggattttgagggtggagtctcataagaagtctcttttaaaggagtcttgatcataaaaatacaatgatgaaagctaggaa 42660352  T
Q  121 gattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccg 202  Q
    ||||||||||||||||| ||  |||||| || ||| ||| ||| |||||||||||| ||||||| |||  ||||| |||||||    
T  42660353 gattaatattgtccttaaaatgactatcaatattacaaacatgctcagaattggtgctggtgctatccggattacataatccg 42660435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 233
Target Start/End: Original strand, 25140452 - 25140597
Alignment:
Q  89 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtcc 187  Q
    ||||||||||| | ||||| || || |||||||||||||||||| |||| ||  | ||| ||||||| ||| ||||||||||||||||||| |||| | |    
T  25140452 aatcataaaaagataaggatgagagttaggaagattaatattgttcttaaaatgattatacatgttacaaacatgttcagaattggtgttgatgctattc 25140551  T
Q  188 aaattacgtaatccggattgcatcagcaccatgaaaagaatggtgt 233  Q
     |||||||||||||| | ||||| |||||| |||||| || |||||    
T  25140552 gaattacgtaatccgaactgcattagcaccgtgaaaaaaagggtgt 25140597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 50392453 - 50392522
Alignment:
Q  166 agaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaagaatggtgttt 235  Q
    |||||||||| ||||||||||   ||||||||||||||||||||||||||||||||||| || |||||||    
T  50392453 agaattggtgatggtgctgtctggattacgtaatccggattgcatcagcaccatgaaaaaaagggtgttt 50392522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 14474184 - 14474247
Alignment:
Q  115 taggaagattaatattgtccttagaaaactatccatgttataaatatgttcagaattggtgttg 178  Q
    |||||||||||||||||| |||| |  ||||||||||||| ||| ||||||| |||| ||||||    
T  14474184 taggaagattaatattgttcttaaacgactatccatgttacaaacatgttcaaaatttgtgttg 14474247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 42660214 - 42660248
Alignment:
Q  190 attacgtaatccggattgcatcagcaccatgaaaa 224  Q
    ||||||||||||||||||||| |||||||||||||    
T  42660214 attacgtaatccggattgcattagcaccatgaaaa 42660248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 50391680 - 50391714
Alignment:
Q  190 attacgtaatccggattgcatcagcaccatgaaaa 224  Q
    |||||||| ||||||||||||||||||||||||||    
T  50391680 attacgtattccggattgcatcagcaccatgaaaa 50391714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 7931852 - 7931795
Alignment:
Q  115 taggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 171  Q
    |||||||||||||||||||| || || |||||||||||||| ||| ||||| ||||||    
T  7931852 taggaagattaatattgtccctaaaataactatccatgttacaaacatgtttagaatt 7931795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 25752396 - 25752473
Alignment:
Q  95 aaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 171  Q
    ||||||| || || || ||||||||||||| |||||||||||| ||  ||||||||||||| ||| ||||| ||||||    
T  25752396 aaaaacataaagatgagagctaggaagattgatattgtccttaaaatgactatccatgttacaaacatgtttagaatt 25752473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 25752227 - 25752293
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagg---gcagtcccgtaagaactcctttctaagggagtc 86  Q
    |||||||| ||| ||||||||||||||||||   | ||||||||||||| ||  |||||||||||||    
T  25752227 ggtctaaacgatggaattttggattttgaggggcggagtcccgtaagaagtctcttctaagggagtc 25752293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 40703878 - 40703802
Alignment:
Q  96 aaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 171  Q
    |||||| ||||| || || |||||||||||||||||||| || ||  ||||||||||||| ||| ||||| ||||||    
T  40703878 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatt 40703802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 41323044 - 41323128
Alignment:
Q  95 aaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttg 178  Q
    ||||||| ||||| || || |||||||||||||||||||| || ||  | ||||||||||| ||| ||||| |||||| ||||||    
T  41323044 aaaaacaaaaggatgagagttaggaagattaatattgtccataaaatgattatccatgttacaaacatgtttagaatttgtgttg 41323128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 54631276 - 54631342
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagg---gcagtcccgtaagaactcctttctaagggagtc 86  Q
    |||||||| ||| |||||||| |||||||||   | ||||||||||||| ||||||||| |||||||    
T  54631276 ggtctaaacgatggaattttgtattttgaggtgcggagtcccgtaagaagtcctttctatgggagtc 54631342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 205684 - 205883
Alignment:
Q  24 gtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaa-acacaaggacgaaagctaggaa 120  Q
    |||||||||||  ||||||||||||||||||   ||||||||||||| ||  ||||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  205684 gtctaaatgatgaaattttggattttgagggtggagtcccgtaagaagtctcttctaagggagtcttgatcataaaaaacacaaggatgaaagctaggaa 205783  T
Q  121 gattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccat 219  Q
    |||||||||| |||||| ||  |||| | |||||| ||| |||||||||||||||| ||||| ||||   ||||||||||||||||||||| | ||||||    
T  205784 gattaatattatccttaaaatgactaccaatgttacaaacatgttcagaattggtgctggtgatgtctggattacgtaatccggattgcattaacaccat 205883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 205894 - 205952
Alignment:
Q  23 ggtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaa 79  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||||| ||||||||||    
T  205894 ggtctaaatgatggaattttggattttgagggcggagtcccgtaagaagtcctttctaa 205952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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