View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3952_high_5 (Length: 350)
Name: NF3952_high_5
Description: NF3952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3952_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 4 - 332
Target Start/End: Complemental strand, 2114664 - 2114336
Alignment:
| Q |
4 |
ggaggagcagagaaccaaatttagaggcttggattgaacaaccgatgataggtaacagttcattgaagagattgaagaataagaagtcaaaaagtggaag |
103 |
Q |
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| T |
2114664 |
ggaggaacaaagaaccaaatttagaggcttggattgaacaaccgatgataggtaacagttcattgaagagattgaagaataagaagtcaaaaagtggaag |
2114565 |
T |
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| Q |
104 |
ctacaactacaagagtttgtgtagtagtagtgtgatttgcattagcggagtttctggaattggaaaatctgaattggcattagaatttgctcatagatat |
203 |
Q |
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| T |
2114564 |
ctacaactacaagagtttgtgtagtagtagtgtgatttgcattagcggagtttctggaattggaaaatctgaattggcattagaatttgctcatagatat |
2114465 |
T |
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| Q |
204 |
taccaaaggtacaagatggttttgtggattggtggtgaagctaggaattttagacagaacatattgaacttgtcacgaaatttcggtttggatgttggtg |
303 |
Q |
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| T |
2114464 |
taccaaaggtacaagatggttttgtggattggtggtgaagctaggaattttagacagaacatattgaacttgtcacgaaatttcggtttggatgttggtg |
2114365 |
T |
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| Q |
304 |
ctgattccgagattgaaaggggtcgaatt |
332 |
Q |
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| T |
2114364 |
ctgattccgagattgaaaggggtcgaatt |
2114336 |
T |
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