View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3952_low_4 (Length: 403)

Name: NF3952_low_4
Description: NF3952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3952_low_4
NF3952_low_4
[»] chr4 (2 HSPs)
chr4 (13-386)||(8239515-8239888)
chr4 (13-387)||(15805861-15806234)
[»] chr7 (1 HSPs)
chr7 (18-241)||(23907044-23907267)
[»] chr3 (2 HSPs)
chr3 (18-241)||(44448059-44448282)
chr3 (183-217)||(43142801-43142835)
[»] chr2 (2 HSPs)
chr2 (18-241)||(7817350-7817573)
chr2 (36-241)||(1485801-1486006)
[»] chr1 (1 HSPs)
chr1 (10-229)||(45332126-45332344)


Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 13 - 386
Target Start/End: Complemental strand, 8239888 - 8239515
Alignment:
Q  13 gagaacacgaagaatccttctttcattgtgttcgggactgcagattttctaaaattatttggcataaaattggcttttctagtccggatttcttctcgtc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8239888 gagaacacgaagaatccttctttcattgtgttcgggactgcagattttctaaaattatttggcataaaattggcttttctagtccggatttcttctcgtc 8239789  T
Q  113 ctcttcggtgcaggactggttgaaggatggaattagctgccaccgtcccactacctttctcgcaggactgtggtggatttggagacaccgcaacctcatg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8239788 ctcttcggtgcaggactggttgaaggatggaattagctgccaccgtcccactacctttctcgcaggactgtggtggatttggagacaccgcaacctcatg 8239689  T
Q  213 tgccttatcaatgaaactcgttcagtttaccgtctcaactttattattaacagtacagcagatttgatcaaccgctgtctgcaaagtgacaccagctctc 312  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8239688 tgccttaacaatgaaactcgttcagtttaccgtctcaactttattattaacagtacagcagatttgatcaaccgctgtctgcaaagtgacaccagctctc 8239589  T
Q  313 cccctcaagcaaggcttgtccgttggaataatgaagatcatgcttgctctattcttaatgtcgatggaagctgc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8239588 cccctcaagcaaggcttgtccgttggaataatgaagatcatgcttgctctattcttaatgttgatggaagctgc 8239515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 13 - 387
Target Start/End: Complemental strand, 15806234 - 15805861
Alignment:
Q  13 gagaacacgaagaatccttctttcattgtgttcgggactgcagattttctaaaattatttggcataaaattggcttttctagtccggatttcttctcgtc 112  Q
    |||| ||||||||||||||  |||| |||||| |||||| || ||||||||  ||||||||||||||  |||||||||| |||||| |||||||||| |     
T  15806234 gagatcacgaagaatccttacttcactgtgtttgggactacatattttctagcattatttggcataatgttggcttttcgagtccgaatttcttctcttt 15806135  T
Q  113 ctcttcggtgcaggactggttgaaggatggaattagctgccaccgtcccactacctttctcgcaggactgtggtggatttggagacaccgcaacctcatg 212  Q
    ||||||||||| ||||| ||||||||| ||||||||| ||| | || |||||||||||||||||||  ||||||||||||||||||||| | ||||||||    
T  15806134 ctcttcggtgctggacttgttgaaggaaggaattagcagccgcggttccactacctttctcgcaggtttgtggtggatttggagacacctccacctcatg 15806035  T
Q  213 tgccttatcaatgaaactcgttcagtttaccgtctcaactttattattaacagtacagcagatttgatcaaccgctgtctgcaaagtgacaccagctctc 312  Q
    |||||||  ||| ||||||||||||||||||| ||||||   ||||||||||||||| ||||  | |||||||| ||| |||||||| |||| |||||||    
T  15806034 tgccttaataataaaactcgttcagtttaccgcctcaacaccattattaacagtacaacagacattatcaaccgttgtttgcaaagt-acacaagctctc 15805936  T
Q  313 cccctcaagcaaggcttgtccgttggaataatgaagatcatgcttgctctattcttaatgtcgatggaagctgct 387  Q
    || ||||||  |||||||||| |||||||||| ||||||||||||| || ||||| |||||||||||||||||||    
T  15805935 ccgctcaagtgaggcttgtccattggaataataaagatcatgcttgttcaattctaaatgtcgatggaagctgct 15805861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 23907267 - 23907044
Alignment:
Q  18 cacgaagaatccttctttcattgtgttcgggactgcagattttctaaaattatttggcataaaattggcttttctagtccggatttcttctcgtcctctt 117  Q
    |||||||| |||||  | ||||||||| |||||||||||||||| |  |||||||||||||||||||||||  ||||||||   ||||||||||||||||    
T  23907267 cacgaagagtcctttctccattgtgttagggactgcagattttccactattatttggcataaaattggcttcactagtccgtcattcttctcgtcctctt 23907168  T
Q  118 cggtgcaggactggttgaaggatggaattagctgccaccgtcccactacctttctcgcaggactgtggtggatttggagacaccgcaacctcatgtgcct 217  Q
    | || |  || ||||| || || ||| |||||||||||||  |||||| |||||| || ||  | ||||||| |||||| |||||||| || ||||||||    
T  23907167 ctgttcttgattggttaaaagagggagttagctgccaccgatccactatctttcttgcggggttatggtggacttggaggcaccgcaatcttatgtgcct 23907068  T
Q  218 tatcaatgaaactcgttcagttta 241  Q
    ||  ||||||||| | ||||||||    
T  23907067 taataatgaaacttggtcagttta 23907044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 44448059 - 44448282
Alignment:
Q  18 cacgaagaatccttctttcattgtgttcgggactgcagattttctaaaattatttggcataaaattggcttttctagtccggatttcttctcgtcctctt 117  Q
    |||||||| |||||  | ||||| |||||||||||||||||||| |  |||||||||||||||||||||||  ||||||||   ||||||||||||||||    
T  44448059 cacgaagagtcctttctccattgcgttcgggactgcagattttccactattatttggcataaaattggcttcactagtccgtcattcttctcgtcctctt 44448158  T
Q  118 cggtgcaggactggttgaaggatggaattagctgccaccgtcccactacctttctcgcaggactgtggtggatttggagacaccgcaacctcatgtgcct 217  Q
    | |  |  || ||||| || || ||| || ||||||||||| |||||| ||| || || ||  | ||||||| |||||| |||||||| || ||||| ||    
T  44448159 ctgctcttgattggttaaaagagggagttggctgccaccgttccactatcttccttgcggggttatggtggacttggaggcaccgcaatcttatgtgtct 44448258  T
Q  218 tatcaatgaaactcgttcagttta 241  Q
    ||  ||||||||| | ||||||||    
T  44448259 taataatgaaacttggtcagttta 44448282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 43142835 - 43142801
Alignment:
Q  183 tggtggatttggagacaccgcaacctcatgtgcct 217  Q
    ||||||||||||||||||||||| |||||||||||    
T  43142835 tggtggatttggagacaccgcaatctcatgtgcct 43142801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 7817350 - 7817573
Alignment:
Q  18 cacgaagaatccttctttcattgtgttcgggactgcagattttctaaaattatttggcataaaattggcttttctagtccggatttcttctcgtcctctt 117  Q
    |||||||| |||||  | ||||| |||||||||||||||||||| |  |||||||||||||||||||||||  ||||||||   ||||||||||||||||    
T  7817350 cacgaagagtcctttctccattgcgttcgggactgcagattttccactattatttggcataaaattggcttcactagtccgtcattcttctcgtcctctt 7817449  T
Q  118 cggtgcaggactggttgaaggatggaattagctgccaccgtcccactacctttctcgcaggactgtggtggatttggagacaccgcaacctcatgtgcct 217  Q
    | |  |  || ||||| || || ||| || ||||||||||| |||||| ||| || || ||  | ||||||| |||||| |||||||| || ||||| ||    
T  7817450 ctgctcttgattggttaaaagagggagttggctgccaccgttccactatcttccttgcggggttatggtggacttggaggcaccgcaatcttatgtgtct 7817549  T
Q  218 tatcaatgaaactcgttcagttta 241  Q
    ||  ||||||||| | ||||||||    
T  7817550 taataatgaaacttggtcagttta 7817573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 241
Target Start/End: Complemental strand, 1486006 - 1485801
Alignment:
Q  36 cattgtgttcgggactgcagattttctaaaattatttggcataaaattggcttttctagtccggatttcttctcgtcctcttcggtgcaggactggttga 135  Q
    ||||| ||||||||| |||||||||| |  |||||||||||||||||||||||  ||||||||   ||||||||||||||||| || |  || || || |    
T  1486006 cattgcgttcgggacagcagattttccactattatttggcataaaattggcttcactagtccgtcattcttctcgtcctcttctgttcttgattgcttaa 1485907  T
Q  136 aggatggaattagctgccaccgtcccactacctttctcgcaggactgtggtggatttggagacaccgcaacctcatgtgccttatcaatgaaactcgttc 235  Q
    | || ||| |||| ||||||||| |||||| |||||| || ||  | ||||||| |||||| |||| ||| || ||||||||||  ||||||||| | ||    
T  1485906 aagagggagttagttgccaccgttccactatctttcttgcggggttatggtggacttggaggcacctcaatcttatgtgccttaataatgaaacttggtc 1485807  T
Q  236 agttta 241  Q
    ||||||    
T  1485806 agttta 1485801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 45332126 - 45332344
Alignment:
Q  10 gcagagaacacgaagaatccttctttcattgtgttcgggactgcagattttctaaaattatttggcataaaattggcttttctagtccggatttcttctc 109  Q
    ||||||| ||||||||| | |||||||| ||  |  ||||||||| |||||| || ||| | ||||||||||||||||||||||  ||||  |||||||     
T  45332126 gcagagaccacgaagaaacattctttcactgcatcagggactgcatattttccaacattgtctggcataaaattggcttttctaa-ccggcattcttctt 45332224  T
Q  110 gtcctcttcggtgcaggactggttgaaggatggaattagctgccaccgtcccactacctttctcgcaggactgtggtggatttggagacaccgcaacctc 209  Q
    | ||||||| |||   || ||| | ||||||| ||||| ||  |||||| ||| ||  |||||||| || ||||| ||||||||||| |||||||| ||     
T  45332225 gacctcttctgtgatcgaatggataaaggatgaaattaactctcaccgttccaatatttttctcgcgggtctgtgttggatttggaggcaccgcaatctt 45332324  T
Q  210 atgtgccttatcaatgaaac 229  Q
    |||||||| | |||||||||    
T  45332325 atgtgcctaaacaatgaaac 45332344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University