View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3952_low_7 (Length: 247)

Name: NF3952_low_7
Description: NF3952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3952_low_7
NF3952_low_7
[»] chr1 (22 HSPs)
chr1 (59-231)||(38335918-38336090)
chr1 (58-247)||(45427660-45427846)
chr1 (59-221)||(48119628-48119790)
chr1 (58-227)||(44112676-44112845)
chr1 (59-227)||(35003294-35003462)
chr1 (58-227)||(45705824-45705993)
chr1 (58-226)||(45639665-45639833)
chr1 (59-227)||(46168383-46168551)
chr1 (58-227)||(38113127-38113296)
chr1 (58-227)||(41065152-41065319)
chr1 (58-221)||(26585461-26585624)
chr1 (59-227)||(35000045-35000213)
chr1 (59-158)||(37814778-37814877)
chr1 (59-158)||(43571087-43571186)
chr1 (58-158)||(5489775-5489875)
chr1 (108-158)||(48498963-48499013)
chr1 (97-158)||(4401366-4401427)
chr1 (61-153)||(2497568-2497660)
chr1 (101-153)||(4888085-4888137)
chr1 (180-234)||(4401449-4401503)
chr1 (109-158)||(23989524-23989573)
chr1 (97-158)||(24769500-24769561)
[»] chr8 (27 HSPs)
chr8 (58-221)||(18066656-18066819)
chr8 (58-227)||(35181515-35181684)
chr8 (45-233)||(34304775-34304962)
chr8 (61-227)||(33629925-33630091)
chr8 (107-227)||(10678084-10678204)
chr8 (77-221)||(16358771-16358915)
chr8 (58-198)||(16603587-16603727)
chr8 (58-216)||(19386508-19386671)
chr8 (61-158)||(42295197-42295294)
chr8 (61-158)||(29800951-29801048)
chr8 (58-158)||(5754902-5755002)
chr8 (58-158)||(36743484-36743584)
chr8 (59-158)||(11582766-11582865)
chr8 (61-158)||(26125637-26125734)
chr8 (61-153)||(20148762-20148854)
chr8 (108-158)||(2547045-2547095)
chr8 (58-158)||(30660743-30660843)
chr8 (74-158)||(31384679-31384763)
chr8 (59-158)||(29705362-29705461)
chr8 (61-146)||(30912575-30912660)
chr8 (109-158)||(42197436-42197485)
chr8 (179-234)||(2547116-2547171)
chr8 (179-230)||(42295314-42295365)
chr8 (112-158)||(9241605-9241651)
chr8 (109-147)||(45397366-45397404)
chr8 (179-227)||(2165895-2165943)
chr8 (109-153)||(42699307-42699351)
[»] chr5 (11 HSPs)
chr5 (58-231)||(17208073-17208246)
chr5 (59-227)||(32473326-32473494)
chr5 (58-227)||(30622651-30622819)
chr5 (61-158)||(5256997-5257094)
chr5 (97-158)||(33801507-33801568)
chr5 (59-158)||(2614650-2614749)
chr5 (59-158)||(22512305-22512404)
chr5 (59-158)||(41334664-41334763)
chr5 (58-158)||(7617132-7617232)
chr5 (58-158)||(18033981-18034081)
chr5 (58-158)||(38470578-38470678)
[»] chr7 (30 HSPs)
chr7 (58-227)||(40236918-40237087)
chr7 (60-227)||(31408565-31408732)
chr7 (59-228)||(31513287-31513456)
chr7 (58-227)||(27535163-27535332)
chr7 (58-227)||(33384869-33385039)
chr7 (61-158)||(10573751-10573848)
chr7 (58-234)||(9216301-9216476)
chr7 (59-158)||(24001013-24001112)
chr7 (62-153)||(26898408-26898499)
chr7 (75-158)||(27393261-27393344)
chr7 (59-158)||(42538432-42538531)
chr7 (58-158)||(35069720-35069820)
chr7 (61-153)||(44326180-44326272)
chr7 (97-158)||(38160580-38160641)
chr7 (179-234)||(16180282-16180337)
chr7 (59-126)||(39998408-39998475)
chr7 (59-158)||(45326020-45326119)
chr7 (108-158)||(5015444-5015494)
chr7 (96-158)||(43343625-43343687)
chr7 (96-158)||(44416935-44416997)
chr7 (97-158)||(4638200-4638261)
chr7 (97-158)||(32029818-32029879)
chr7 (58-158)||(24280597-24280697)
chr7 (58-158)||(43317442-43317542)
chr7 (108-147)||(42972901-42972940)
chr7 (179-226)||(43317563-43317610)
chr7 (179-233)||(38160505-38160559)
chr7 (58-158)||(5194232-5194332)
chr7 (179-227)||(43343556-43343604)
chr7 (179-227)||(44416866-44416914)
[»] chr2 (29 HSPs)
chr2 (58-227)||(43114556-43114725)
chr2 (61-247)||(11825569-11825752)
chr2 (59-227)||(12415392-12415560)
chr2 (59-227)||(12427452-12427620)
chr2 (58-231)||(16803967-16804140)
chr2 (58-231)||(16843249-16843422)
chr2 (61-221)||(41281912-41282072)
chr2 (48-247)||(966749-966944)
chr2 (83-229)||(4451880-4452026)
chr2 (58-227)||(18491704-18491873)
chr2 (58-227)||(34895673-34895842)
chr2 (61-227)||(4299352-4299518)
chr2 (123-221)||(12531601-12531699)
chr2 (74-231)||(14285691-14285848)
chr2 (58-158)||(30838631-30838731)
chr2 (61-158)||(43490402-43490499)
chr2 (175-227)||(6518426-6518478)
chr2 (59-158)||(1750414-1750513)
chr2 (60-158)||(19047158-19047256)
chr2 (97-158)||(43335764-43335825)
chr2 (58-158)||(4764727-4764827)
chr2 (58-158)||(12302254-12302354)
chr2 (59-158)||(13780736-13780835)
chr2 (179-227)||(4764658-4764706)
chr2 (61-144)||(6518484-6518566)
chr2 (59-158)||(16096747-16096846)
chr2 (179-234)||(43335688-43335743)
chr2 (60-158)||(34817777-34817875)
chr2 (107-153)||(42849864-42849910)
[»] scaffold0003 (1 HSPs)
scaffold0003 (61-247)||(45634-45817)
[»] chr6 (20 HSPs)
chr6 (61-247)||(27441544-27441727)
chr6 (58-227)||(33242402-33242571)
chr6 (58-231)||(31109150-31109323)
chr6 (59-227)||(33253913-33254082)
chr6 (58-158)||(3213399-3213499)
chr6 (59-158)||(13743222-13743321)
chr6 (59-158)||(13748722-13748821)
chr6 (59-158)||(30014343-30014442)
chr6 (58-158)||(7273336-7273436)
chr6 (58-158)||(9698334-9698434)
chr6 (61-153)||(24203993-24204085)
chr6 (58-158)||(26466798-26466898)
chr6 (58-158)||(26670010-26670110)
chr6 (58-153)||(7367548-7367643)
chr6 (58-158)||(21279928-21280028)
chr6 (58-158)||(21293678-21293778)
chr6 (58-158)||(7292746-7292846)
chr6 (179-227)||(24203919-24203967)
chr6 (179-234)||(26466919-26466974)
chr6 (179-227)||(30736102-30736150)
[»] chr3 (31 HSPs)
chr3 (59-221)||(34791829-34791991)
chr3 (58-227)||(10457824-10457993)
chr3 (58-231)||(25996267-25996440)
chr3 (58-228)||(4190196-4190366)
chr3 (58-227)||(9434123-9434292)
chr3 (59-233)||(51757593-51757767)
chr3 (58-221)||(52627915-52628078)
chr3 (58-158)||(46941052-46941152)
chr3 (59-153)||(45126934-45127028)
chr3 (58-159)||(53273684-53273785)
chr3 (60-158)||(40480750-40480848)
chr3 (58-158)||(40808864-40808964)
chr3 (59-147)||(42100688-42100776)
chr3 (60-158)||(54237097-54237195)
chr3 (47-158)||(25413669-25413780)
chr3 (60-158)||(42394420-42394518)
chr3 (58-158)||(47191027-47191126)
chr3 (58-158)||(54246149-54246249)
chr3 (179-234)||(40808985-40809040)
chr3 (109-158)||(24688403-24688452)
chr3 (109-158)||(27748613-27748662)
chr3 (97-158)||(53581859-53581920)
chr3 (59-158)||(36150130-36150229)
chr3 (179-234)||(36150250-36150305)
chr3 (179-234)||(53581783-53581838)
chr3 (109-163)||(19148829-19148883)
chr3 (108-158)||(51249357-51249407)
chr3 (109-158)||(52629878-52629927)
chr3 (179-227)||(1078338-1078386)
chr3 (182-226)||(11064655-11064699)
chr3 (179-227)||(19148888-19148936)
[»] chr4 (39 HSPs)
chr4 (59-221)||(17619090-17619252)
chr4 (59-227)||(55272308-55272476)
chr4 (58-227)||(711959-712128)
chr4 (61-227)||(38851515-38851681)
chr4 (58-231)||(960798-960971)
chr4 (58-227)||(48435511-48435680)
chr4 (61-227)||(35037007-35037173)
chr4 (58-227)||(32728356-32728525)
chr4 (96-227)||(19879991-19880122)
chr4 (58-220)||(46827645-46827807)
chr4 (61-227)||(3756184-3756344)
chr4 (107-232)||(36004043-36004168)
chr4 (58-153)||(48463456-48463551)
chr4 (58-147)||(55966358-55966447)
chr4 (58-158)||(33703140-33703240)
chr4 (61-158)||(27893843-27893940)
chr4 (58-153)||(27864563-27864658)
chr4 (59-158)||(35017733-35017831)
chr4 (58-146)||(28982835-28982923)
chr4 (97-158)||(43949802-43949863)
chr4 (62-158)||(23204779-23204875)
chr4 (58-158)||(28988472-28988572)
chr4 (179-234)||(28982747-28982802)
chr4 (59-158)||(45490314-45490413)
chr4 (108-158)||(39631150-39631200)
chr4 (58-147)||(1771278-1771367)
chr4 (61-158)||(43735744-43735841)
chr4 (58-158)||(23035979-23036079)
chr4 (179-234)||(35017852-35017907)
chr4 (108-158)||(27550358-27550408)
chr4 (112-158)||(31680955-31681001)
chr4 (60-158)||(41878407-41878505)
chr4 (97-147)||(43514698-43514748)
chr4 (97-158)||(12496994-12497055)
chr4 (109-158)||(21687056-21687105)
chr4 (109-158)||(25051743-25051792)
chr4 (74-158)||(27316714-27316798)
chr4 (182-234)||(27864687-27864739)
chr4 (183-227)||(41848095-41848139)
[»] scaffold0100 (1 HSPs)
scaffold0100 (59-227)||(35388-35556)
[»] scaffold0119 (1 HSPs)
scaffold0119 (58-158)||(684-784)
[»] scaffold0187 (4 HSPs)
scaffold0187 (58-158)||(14189-14289)
scaffold0187 (58-158)||(24517-24617)
scaffold0187 (179-234)||(14114-14169)
scaffold0187 (179-234)||(24442-24497)
[»] scaffold0038 (1 HSPs)
scaffold0038 (60-158)||(112656-112754)
[»] scaffold0385 (1 HSPs)
scaffold0385 (58-158)||(11250-11350)
[»] scaffold0157 (1 HSPs)
scaffold0157 (97-158)||(23422-23483)


Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 59 - 231
Target Start/End: Original strand, 38335918 - 38336090
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||||||||| | |||||||||||| ||||| |||| ||||||||| |||| ||||||||||||||||||||||||||    
T  38335918 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 38336017  T
Q  159 tcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacataggg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||    
T  38336018 tcatctcctctcccttttccttgccacatgtcaggattttgtgtgaatataagaggtgtattgccacataggg 38336090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 58 - 247
Target Start/End: Complemental strand, 45427846 - 45427660
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| || ||| |||||||||| | | ||||||||| |||||| |||||||| ||||| ||||||||||||||||||||||||||||||    
T  45427846 aggaaaatgttacatgaataccttttaatcatacaccctattgtacactccatgcattagggacattttggtaatttcatctcacaaccatactttctct 45427747  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtggatgtacatgtatc 247  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||   | |||||||||||||||    
T  45427746 ttcatctcctctcccttttccttaccacatgtcaggattttgtgtggatggaagaggtgtattgccacat---ggggatgtacatgtatc 45427660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 59 - 221
Target Start/End: Original strand, 48119628 - 48119790
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||||||||| | | |||||||||  ||||| |||| ||||||||| |||| ||||||||||||||||||||||||||    
T  48119628 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 48119727  T
Q  159 tcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattg 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48119728 tcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattg 48119790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 44112676 - 44112845
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||||||||| | | |||||||||  ||||| |||||||| ||||| ||||||||||||||||||||||||||||||    
T  44112676 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctct 44112775  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||    
T  44112776 ttcatctcctctcacttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgccacat 44112845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 59 - 227
Target Start/End: Original strand, 35003294 - 35003462
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||||||||| | | |||||||||  ||||  |||| ||||||||| |||| ||||||||||||||||||||||||||    
T  35003294 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctcacaaccatactttctctt 35003393  T
Q  159 tcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  35003394 tcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacat 35003462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 45705824 - 45705993
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    |||||||||||  || ||||||||||||||||| ||  ||||||||| |||||| |||| ||| |||||  ||| |||||||||||||||||||||||||    
T  45705824 aggaaaatgttatatgaacaccctttaatcatacattctattgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctct 45705923  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  45705924 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacat 45705993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 58 - 226
Target Start/End: Complemental strand, 45639833 - 45639665
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||| ||||||||||| ||| |||||||||  ||||  |||| ||||||||| |||| |||||||||||| ||||||||||||    
T  45639833 aggaaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctcacaatcatactttctct 45639734  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcaca 226  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||    
T  45639733 ttcatctcctctcccttttccttgccacatgttaggattttgtgtgggtgtaagaggtgtattgccaca 45639665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 59 - 227
Target Start/End: Original strand, 46168383 - 46168551
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||||||||||||| |||||||||  | ||| |||| ||||||||| |||| ||||||||||||||||||||||||||    
T  46168383 ggaaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 46168482  T
Q  159 tcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||| |||||||| ||||||| |||||    
T  46168483 tcatctcctctccctttttcttgccacatgtcataattttgtgtgggtgtaagagatgtattgccacat 46168551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 38113296 - 38113127
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    |||||||||||  || ||||||||||||||||| | | |||||||||  ||||| ||||  || ||||| |||| |||||||||||||||||||| ||||    
T  38113296 aggaaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctcacaaccatacttactct 38113197  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38113196 ttcatctcctctcccttttctttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgtcacat 38113127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 41065152 - 41065319
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||||||||| | | | |||||||  ||||| |||||||  ||||| ||||||||||||||||||||||||||||||    
T  41065152 aggaaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaatttcatctcacaaccatactttctct 41065251  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||| ||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  41065252 ttcctctc--ctcccttttccttgccacatgtcaggattttgtgcggatgtaagaggtgtattgccacat 41065319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 58 - 221
Target Start/End: Original strand, 26585461 - 26585624
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    |||||||||||  || ||||  ||||||||||| |   |||||||||  ||||| |||| |||||||||||||| |||||||| ||| ||||||||||||    
T  26585461 aggaaaatgttagatgaacattctttaatcatacactatattgtacaccccatgcattaaggatattttagtaaattcatctcgcaatcatactttctct 26585560  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattg 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26585561 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagagatgtattg 26585624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 59 - 227
Target Start/End: Complemental strand, 35000213 - 35000045
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| |||||| |||||||||| |   ||||||| | | ||||||||||||| |||||  ||| || |||||||||||||||||||||||    
T  35000213 ggaaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttgataaatttatctcacaaccatactttctctt 35000114  T
Q  159 tcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| |||||    
T  35000113 tcatctcctctcccttttccttgccacatgtcaggattttgtatgggtgtaagagatgtattgccacat 35000045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 158
Target Start/End: Original strand, 37814778 - 37814877
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||| ||||| |||| ||||||||  |||||||||| ||||||||| |||| ||||| ||||||||| ||||| ||||    
T  37814778 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaaccacactttatctt 37814877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 158
Target Start/End: Complemental strand, 43571186 - 43571087
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||| || || | || ||||||||  |||||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  43571186 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 43571087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 5489775 - 5489875
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| || || |||  ||||||||  | |||||||||||||||||| |||| ||||||||||||||| ||||| |||    
T  5489775 aggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatct 5489874  T
Q  158 t 158  Q
    |    
T  5489875 t 5489875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 48499013 - 48498963
Alignment:
Q  108 catgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  48499013 catgtattagggatattttggtaagttcatctcacaaccacactttatctt 48498963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 4401366 - 4401427
Alignment:
Q  97 attgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||  ||||||||||| |||||||| |||| ||||||||||||||| ||||| ||||    
T  4401366 attgtacaccccatgtattagagatattttggtaagttcatctcacaaccacactttatctt 4401427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 153
Target Start/End: Complemental strand, 2497660 - 2497568
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatacttt 153  Q
    |||||||| ||| |||||| |||| ||||| ||   ||||||||  |||| ||||| ||||||||| |||| ||||||||||||||| |||||    
T  2497660 aaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctcacaaccacacttt 2497568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 4888085 - 4888137
Alignment:
Q  101 tacattccatgtattagggatattttagtaatttcatctcacaaccatacttt 153  Q
    ||||| |||||||||||||||||||| |||| || |||||||||||| |||||    
T  4888085 tacatcccatgtattagggatattttggtaagtttatctcacaaccacacttt 4888137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 4401449 - 4401503
Alignment:
Q  180 tgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtgg 234  Q
    |||||| |||||| ||||||||||| |||||  ||||||||| ||||||||||||    
T  4401449 tgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatagggtgg 4401503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 23989573 - 23989524
Alignment:
Q  109 atgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||||||||||| |||| || |||||||||||| ||||| ||||    
T  23989573 atgtattagggatattttggtaaatttatctcacaaccacactttatctt 23989524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 24769561 - 24769500
Alignment:
Q  97 attgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||  |||||||||||||||||||| |||| ||| | ||||||||| ||||| ||||    
T  24769561 attgtacaccccatgtattagggatattttggtaagttcttatcacaaccacactttatctt 24769500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 18066819 - 18066656
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||||||||| ||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18066819 aggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctcacaaccatactttctct 18066720  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattg 221  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||    
T  18066719 ttcatctcctctccattttccttgccacatgtcagaattttatgtgggtgtaagaggtgtattg 18066656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 35181515 - 35181684
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||||||||| | | |||||||||  ||||| |||||||| ||||| ||||||||||||||||||||||||||||||    
T  35181515 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctct 35181614  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  35181615 ttcatctcctctcacttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacat 35181684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 45 - 233
Target Start/End: Original strand, 34304775 - 34304962
Alignment:
Q  45 gggtatatattacaggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaa 144  Q
    |||| ||||||| ||||||||||| ||| |||| |||||||||||| | | |||||||||  ||||| |||||||| ||||| |||||||||||||||||    
T  34304775 gggtttatatta-aggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaa 34304873  T
Q  145 ccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtg 233  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| |||||    
T  34304874 ccatactttctctttcatctcctctcacttttccttgccacatgtcaggattttgtttgggtgtaagaggtgtattgccacatggggtg 34304962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 61 - 227
Target Start/End: Complemental strand, 33630091 - 33629925
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctttc 160  Q
    |||||||| ||  ||||||||||||||||| | || ||||||||  | ||| |||||||| |||||||||||||||||||||||| ||||||||||||||    
T  33630091 aaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctcacaactatactttctctttc 33629992  T
Q  161 atctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||||||||||||| |||||||||||||  ||||||||| | |||||||||||||||| |||||    
T  33629991 atctcctctcccttttctttgccacatgtcaaaattttgtgtaggtgtaagaggtgtattgccacat 33629925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 10678204 - 10678084
Alignment:
Q  107 ccatgtattagggatattttagtaatttcatctcacaaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtggat 206  Q
    |||| ||||| ||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10678204 ccatatattaaggacattttggtaaattcatctcacaaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggt 10678105  T
Q  207 gtaagaggtgtattgtcacat 227  Q
    ||||||| ||||||| |||||    
T  10678104 gtaagagatgtattgccacat 10678084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 16358915 - 16358771
Alignment:
Q  77 accctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctttcatctcctctccctttt 176  Q
    |||||||||||||| | | |||||||||| ||||| |||| | |||||||  ||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  16358915 accctttaatcatacaccctattgtacatcccatgcattaagaatattttgataaattcatctcacaaccatactttctttttcatctcctctccctttt 16358816  T
Q  177 ccttgccacatgtcaggattttgtgtggatgtaagaggtgtattg 221  Q
     |||||||||||||| |||||| ||||| | ||||||||||||||    
T  16358815 tcttgccacatgtcatgattttatgtgggtataagaggtgtattg 16358771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 58 - 198
Target Start/End: Complemental strand, 16603727 - 16603587
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| |||  |||||||||||||||| | |||||| ||||  ||||| ||||  || ||||| |||| |||||||||||||||||||| ||||    
T  16603727 aggaaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctcacaaccatacttactct 16603628  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggatttt 198  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  16603627 ttcatctcctctcccttttccttgccacatgtcaggatttt 16603587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 58 - 216
Target Start/End: Complemental strand, 19386671 - 19386508
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattc-----catgtattagggatattttagtaatttcatctcacaaccatactt 152  Q
    ||||||||||| ||| ||||||||||||||||| | | |||| ||| |||     |||| |||| | || ||||  ||| ||||||||||||| ||||||    
T  19386671 aggaaaatgttacatgaacaccctttaatcatacaccctattatactttctctttcatgcattaagaatgttttgataaattcatctcacaactatactt 19386572  T
Q  153 tctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  19386571 tctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtatgaggtg 19386508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 158
Target Start/End: Original strand, 42295197 - 42295294
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||| ||| ||||||||||| || || | || |||||||| ||||||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  42295197 aaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 42295294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 158
Target Start/End: Complemental strand, 29801048 - 29800951
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||| ||| |||||| |||| ||||| |||  ||||||||  |||||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  29801048 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 29800951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 5754902 - 5755002
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| |||||| |||| || || |||  ||||||||| |||| ||||||||||||||| |||| ||||||||||||||| ||||| |||    
T  5754902 aggaaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaagttcatctcacaaccacactttatct 5755001  T
Q  158 t 158  Q
    |    
T  5755002 t 5755002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 36743584 - 36743484
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| || || |||  ||||||||  | |||||||||||||||||| |||| ||||||||||||||| ||||| |||    
T  36743584 aggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatct 36743485  T
Q  158 t 158  Q
    |    
T  36743484 t 36743484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 158
Target Start/End: Original strand, 11582766 - 11582865
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||| || || |||  ||||||||  | |||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  11582766 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 11582865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 158
Target Start/End: Original strand, 26125637 - 26125734
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||| ||| ||||||||||| ||||| ||   ||||||||  | |||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  26125637 aaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 26125734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 20148762 - 20148854
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatacttt 153  Q
    |||||||| ||| ||||||||||| ||||| |||  ||||||||   ||| ||||||||||||||| |||| ||||||||||||||| |||||    
T  20148762 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaaccacacttt 20148854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 2547045 - 2547095
Alignment:
Q  108 catgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||| ||||    
T  2547045 catgtattagggatattttagtaagttcatctcacaaccacactttatctt 2547095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 30660843 - 30660743
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| |  || |||  ||||||||  | |||||||||||||||||| |||| ||||||| ||||||| ||||| |||    
T  30660843 aggaaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtattagggatattttggtaagttcatcttacaaccacactttatct 30660744  T
Q  158 t 158  Q
    |    
T  30660743 t 30660743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 31384679 - 31384763
Alignment:
Q  74 aacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||||| || || ||  |||||||||  |||||||||||| ||||||| |||| ||||||||||||||| ||||| ||||    
T  31384679 aacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttcatctcacaaccacactttatctt 31384763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 158
Target Start/End: Original strand, 29705362 - 29705461
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||| |  || | |  ||||||||  ||||||||||||||||||||  ||| ||||||||||||||| ||||| ||||    
T  29705362 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttcatctcacaaccacactttatctt 29705461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 30912660 - 30912575
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaacc 146  Q
    |||||||| ||| ||||||||||| || || | |  |||||||| | |||||||||||| |||||| |||| ||||||||||||||    
T  30912660 aaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaagttcatctcacaacc 30912575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 42197485 - 42197436
Alignment:
Q  109 atgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  42197485 atgtattagggatattttggtaagttcatctcacaaccacactttatctt 42197436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 2547116 - 2547171
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtgg 234  Q
    ||||||| |||||| ||||||||||| |||||  ||||||||| ||||||||||||    
T  2547116 ttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatagggtgg 2547171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 42295314 - 42295365
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagg 230  Q
    |||||||||||||| |||||||||||||||||  ||| ||||| ||||||||    
T  42295314 ttgccacatgtcagaattttgtgtggatgtaaagggtatattgccacatagg 42295365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 9241605 - 9241651
Alignment:
Q  112 tattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  9241605 tattagggatatttttgtaagttcatctcacaaccacactttatctt 9241651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 45397366 - 45397404
Alignment:
Q  109 atgtattagggatattttagtaatttcatctcacaacca 147  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  45397366 atgtattagggatatttttgtaagttcatctcacaacca 45397404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 2165943 - 2165895
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||| |||||| ||||||||||| |||||  |||||||||||||||    
T  2165943 ttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgtcacat 2165895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 42699307 - 42699351
Alignment:
Q  109 atgtattagggatattttagtaatttcatctcacaaccatacttt 153  Q
    |||||||| ||||||||| |||| ||||||||||||||| |||||    
T  42699307 atgtattatggatatttttgtaagttcatctcacaaccacacttt 42699351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 17208073 - 17208246
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| | | ||||||||||||||||| |  ||||||||||  ||||| |||| ||| ||||| |||| |||||||||||||||||||||||||    
T  17208073 aggaaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctcacaaccatactttctct 17208172  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacataggg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17208173 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacataggg 17208246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 59 - 227
Target Start/End: Complemental strand, 32473494 - 32473326
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||||||||| | |||||||||||   |||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  32473494 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctcacaaccatactttctctt 32473395  T
Q  159 tcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| |||||    
T  32473394 tcatctcctctcccttttctttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgccacat 32473326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 30622819 - 30622651
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| |||| |||||||||||| | | ||||||| |  ||||| |||| ||||||||| |||| || ||||||||||||||||||||||    
T  30622819 aggaaaatgttacatgaacatcctttaatcatacaccctattgta-agcccatgcattaaggatattttggtaaatttatctcacaaccatactttctct 30622721  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||||||||| ||||||||||||||||||||  ||||||||||| |||||||||||||||| |||||    
T  30622720 ttcatctcctctctcttttccttgccacatgtcaaaattttgtgtgggtgtaagaggtgtattgccacat 30622651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 158
Target Start/End: Original strand, 5256997 - 5257094
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||| ||| |||||| |||| ||||| |||  ||||||||  |||||||||||||||||||| |||||||||||||||||||| ||||| ||||    
T  5256997 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaaccacactttatctt 5257094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 33801507 - 33801568
Alignment:
Q  97 attgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| ||||    
T  33801507 attgtacactccatgtattagggatattttagtaagttcatctcacaaccacactttatctt 33801568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 158
Target Start/End: Complemental strand, 2614749 - 2614650
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||| || || |||  ||||||||  | |||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  2614749 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 2614650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 158
Target Start/End: Original strand, 22512305 - 22512404
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||| || || |    |||||||| ||||||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  22512305 ggaaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 22512404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 158
Target Start/End: Complemental strand, 41334763 - 41334664
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||| ||||| | || ||| ||||  | |||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  41334763 ggaaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 41334664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 7617132 - 7617232
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| ||||| |    ||| ||||  |||||||||||||||||||| |||| ||||||||||||||| ||||| |||    
T  7617132 aggaaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatct 7617231  T
Q  158 t 158  Q
    |    
T  7617232 t 7617232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 18033981 - 18034081
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| || || |    ||||||||  | |||||||||||||||||| |||| ||||||||||||||| ||||| |||    
T  18033981 aggaaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacactttatct 18034080  T
Q  158 t 158  Q
    |    
T  18034081 t 18034081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 38470578 - 38470678
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| ||||| ||   ||||||||  |||||||||| ||||||||| |||| ||||| |||||| || ||||| |||    
T  38470578 aggaaaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaaattcatttcacaatcacactttatct 38470677  T
Q  158 t 158  Q
    |    
T  38470678 t 38470678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 40236918 - 40237087
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||||||||| ||| |||||||||  ||||| |||||||| ||||| |||||||||||||||||||||| |||||||    
T  40236918 aggaaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatattttctct 40237017  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  40237018 ttcatctcctctcacttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacat 40237087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 60 - 227
Target Start/End: Complemental strand, 31408732 - 31408565
Alignment:
Q  60 gaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctcttt 159  Q
    ||||||||| ||| ||||||||||||||||| |   |||||||||| ||||| |||| ||||||||| |||| ||||| |||||||||||||||||||||    
T  31408732 gaaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaaattcatttcacaaccatactttctcttt 31408633  T
Q  160 catctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  31408632 catctcctctcccttttccttgccacatgtcaggattttatgtgggtgtaagaggtgtattgtcacat 31408565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 59 - 228
Target Start/End: Original strand, 31513287 - 31513456
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||| ||||||||||| | | ||||||| |  ||||| |||| ||||||||| |||| ||||||||||||||||||||||||||    
T  31513287 ggaaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 31513386  T
Q  159 tcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacata 228  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  31513387 tcatctcctctcccttttccttgccacatgtcaggattttgtgtagatgtaagaggtgtattgccacata 31513456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 27535332 - 27535163
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||||||||| |   ||||||||| ||||||| |||  || ||||| |||||||||||||||||| |||||||||||    
T  27535332 aggaaaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaatttcatctcacaactatactttctct 27535233  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| |||||    
T  27535232 ttcatctcctctcctttttccttgccacatgtcagaattttgtgtggatgtaagagatgtattgccacat 27535163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 33384869 - 33385039
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatct-tattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctc 156  Q
    ||||||||||| ||| |||| | |||||||||| | |  ||||||| | |||||| |||||||| ||||| |||| |||||||||||| |||||||||||    
T  33384869 aggaaaatgttacatgaacatcatttaatcatacacccctattgtatactccatgcattagggacattttggtaaattcatctcacaaacatactttctc 33384968  T
Q  157 tttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||    
T  33384969 tttcatctcctctcccttttccttgccacatatcaggattttgtatgggtgtaagaggtgtattgtcacat 33385039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 158
Target Start/End: Original strand, 10573751 - 10573848
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||| ||| ||||||||||| ||||| ||| |||||||||  |||||||||||| ||||||| |||| ||||||||||||||| ||||| ||||    
T  10573751 aaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctcacaaccacactttatctt 10573848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 234
Target Start/End: Original strand, 9216301 - 9216476
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| || |||||| |||||||||  ||||| ||||| |||||||| |||| ||||||||||||||| | ||| |||    
T  9216301 aggaaaatgttacatgaacaccctttattcctatatcctattgtaca-cccatgcattagagatattttggtaagttcatctcacaaccacattttatct 9216399  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtgg 234  Q
    |  || |        |||   ||||| |||||||| ||||||||||||||||| |||||||||||||||| ||||||    
T  9216400 tctatttgtgtggggtttaagttgccgcatgtcagaattttgtgtggatgtaaaaggtgtattgtcacatggggtgg 9216476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 158
Target Start/End: Complemental strand, 24001112 - 24001013
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||| || || |||  ||||||||  | |||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  24001112 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 24001013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 153
Target Start/End: Complemental strand, 26898499 - 26898408
Alignment:
Q  62 aaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatacttt 153  Q
    ||||||| ||| |||||| |||| ||||| | |  |||||||||||||||||||||||||||||| |||| ||||||| ||||||| |||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaagttcatcttacaaccacacttt 26898408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 27393344 - 27393261
Alignment:
Q  75 acaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| || || ||| ||||||||| || |||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  27393344 acaccctttattcctacatcctattgtacactctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 27393261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 158
Target Start/End: Complemental strand, 42538531 - 42538432
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||| || || |||  ||||||||  | |||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  42538531 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 42538432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 35069720 - 35069820
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||| ||||| || || | || ||||||||   ||||||||||||||||||| |||| ||||||||||||||| ||||| |||    
T  35069720 aggaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatct 35069819  T
Q  158 t 158  Q
    |    
T  35069820 t 35069820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 44326180 - 44326272
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatacttt 153  Q
    |||||||| ||| ||||||||||| ||||| |||  ||||||||   ||| ||||||||||||||| |||| ||||||||||||||| |||||    
T  44326180 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaaccacacttt 44326272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 38160641 - 38160580
Alignment:
Q  97 attgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||  ||||||||||||||||||||||||| ||||||||||||| | ||||| ||||    
T  38160641 attgtacaccccatgtattagggatattttagtaacttcatctcacaactacactttatctt 38160580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 16180337 - 16180282
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtgg 234  Q
    ||||||| |||||| ||||||||||||||||| |||||||||| ||||| ||||||    
T  16180337 ttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgccacatggggtgg 16180282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 39998408 - 39998475
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatatttt 126  Q
    |||||||||| ||| |||||  |||||||||| ||| |||||||||  ||||||||||||||||||||    
T  39998408 ggaaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagggatatttt 39998475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 158
Target Start/End: Original strand, 45326020 - 45326119
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||| |||| ||| |||||| |||| ||||| |||  ||||||||  |||| ||||||||||||||| |||| |||||||||||| || ||||| ||||    
T  45326020 ggaaagtgttacataaacaccttttattcatacatcacattgtacaccccatatattagggatattttggtaagttcatctcacaatcacactttatctt 45326119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 5015444 - 5015494
Alignment:
Q  108 catgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  5015444 catgtattagggatattttggtaagttcatctcacaaccacactttatctt 5015494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 43343687 - 43343625
Alignment:
Q  96 tattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||  ||||||||||||||||||||  ||| ||||||||||||||| ||||| ||||    
T  43343687 tattgtacaccccatgtattagggatattttgataagttcatctcacaaccacactttatctt 43343625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 44416997 - 44416935
Alignment:
Q  96 tattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||  ||||||||||||||||||||  ||| ||||||||||||||| ||||| ||||    
T  44416997 tattgtacaccccatgtattagggatattttgataagttcatctcacaaccacactttatctt 44416935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 4638261 - 4638200
Alignment:
Q  97 attgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||  |||| ||||| ||||||||| |||| ||||||||||||||||||||| ||||    
T  4638261 attgtacaccccatatattatggatattttggtaagttcatctcacaaccatactttatctt 4638200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 32029879 - 32029818
Alignment:
Q  97 attgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||  |||||||||||||||||||| |||| ||||||| ||||||| ||||| ||||    
T  32029879 attgtacaccccatgtattagggatattttggtaaattcatctaacaaccacactttatctt 32029818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 24280697 - 24280597
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| | | ||||||||||| ||||| | | |||| ||||| ||||| | |||  ||||||| |||| |||||||||||| || |||||||||    
T  24280697 aggaaaatgttacgtgaacaccctttattcatacaccctattctacatcccatgcactagaaatattttggtaaattcatctcacaatcacactttctct 24280598  T
Q  158 t 158  Q
    |    
T  24280597 t 24280597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 43317442 - 43317542
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| |||||| |||| ||||| | || ||||||||| | |||  |||||||||||||  ||| |||||||||||| || |||| ||||    
T  43317442 aggaaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttgataaattcatctcacaatcacacttactct 43317541  T
Q  158 t 158  Q
    |    
T  43317542 t 43317542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 42972901 - 42972940
Alignment:
Q  108 catgtattagggatattttagtaatttcatctcacaacca 147  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  42972901 catgtattagggatattttggtaagttcatctcacaacca 42972940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 43317563 - 43317610
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcaca 226  Q
    |||||||||||||| ||||||||||| |||||| ||||||||| ||||    
T  43317563 ttgccacatgtcagaattttgtgtgggtgtaaggggtgtattgccaca 43317610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 38160559 - 38160505
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtg 233  Q
    ||||||| |||||| ||||||||||| |||||| ||||||||| ||||| |||||    
T  38160559 ttgccacgtgtcagaattttgtgtgggtgtaaggggtgtattgccacatggggtg 38160505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 5194332 - 5194232
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| |||||| |||| ||||| | || ||||||||  | |||| ||| |||||||||  ||| |||||||||||| || |||| ||||    
T  5194332 aggaaaatgttacatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatattttgataaattcatctcacaatcacacttactct 5194233  T
Q  158 t 158  Q
    |    
T  5194232 t 5194232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 43343604 - 43343556
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||| |||||| | ||||||||||||||| |||||||||| |||||    
T  43343604 ttgccacgtgtcagaaatttgtgtggatgtaaaaggtgtattgccacat 43343556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 44416914 - 44416866
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||| |||||| | ||||||||||||||| |||||||||| |||||    
T  44416914 ttgccacgtgtcagaaatttgtgtggatgtaaaaggtgtattgccacat 44416866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 43114556 - 43114725
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||||||||| | | |||||||||  ||||| |||||||| ||||| ||||||||||||||||||||||||||||||    
T  43114556 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctct 43114655  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||    
T  43114656 ttcatctcctctcccttttccttgccacttgtcaggattttgtgtgggtgtaagaggtgtattgccacat 43114725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 61 - 247
Target Start/End: Complemental strand, 11825752 - 11825569
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctttc 160  Q
    |||||||| ||| ||||||||||||||||| | | |||||||||  ||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaatcatactttctctttc 11825653  T
Q  161 atctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtggatgtacatgtatc 247  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||   | |||||||||||||||    
T  11825652 atctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacat---ggggatgtacatgtatc 11825569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 59 - 227
Target Start/End: Complemental strand, 12415560 - 12415392
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||||||||| | |||||||||||  ||||| |||||||| ||||| ||||||| |||||||||||||||||||||||    
T  12415560 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctctt 12415461  T
Q  159 tcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| |||||    
T  12415460 tcatctcctctcccttttctttgctacatgtcagaattttgtgtggatgtaagaggtgtattgccacat 12415392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 59 - 227
Target Start/End: Complemental strand, 12427620 - 12427452
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||||||||| | |||||||||||  ||||| |||||||| ||||| ||||||| |||||||||||||||||||||||    
T  12427620 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttctctt 12427521  T
Q  159 tcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| |||||    
T  12427520 tcatctcctctcccttttctttgctacatgtcagaattttgtgtggatgtaagaggtgtattgccacat 12427452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 16803967 - 16804140
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||||||||| | | |||||||||| ||||| |||||||| |||||  |||||||||||||||||||||||||||||    
T  16803967 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctct 16804066  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacataggg 231  Q
    |||||||| || | ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||    
T  16804067 ttcatctcttcacacttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgtcatataggg 16804140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 16843249 - 16843422
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||||||||| | | |||||||||| ||||| |||||||| |||||  |||||||||||||||||||||||||||||    
T  16843249 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctct 16843348  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacataggg 231  Q
    |||||||| || | ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||    
T  16843349 ttcatctcttcacacttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgtcatataggg 16843422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 61 - 221
Target Start/End: Complemental strand, 41282072 - 41281912
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctttc 160  Q
    |||||||| ||| ||||||||||||||||| | | |||||||||  ||||| |||||||| |||||  ||||||||||||||||||||||||||||||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctcacaaccatactttctctttc 41281973  T
Q  161 atctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattg 221  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41281972 atctcctctcacttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattg 41281912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 48 - 247
Target Start/End: Complemental strand, 966944 - 966749
Alignment:
Q  48 tatatattacaggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaacca 147  Q
    ||||||||| ||||||||||| ||| ||||||||||||||||| | | |||||||||  ||||| |||| | |  |||| |||| |||||||||||| ||    
T  966944 tatatatta-aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaagaacgttttggtaaattcatctcacaaaca 966846  T
Q  148 tactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtggatgtacatgtatc 247  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||   | |||||||||||||||    
T  966845 tactttctctttcatctcccctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtatttccacat---ggggatgtacatgtatc 966749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 83 - 229
Target Start/End: Complemental strand, 4452026 - 4451880
Alignment:
Q  83 taatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctttcatctcctctcccttttccttgc 182  Q
    |||||||| |||||||||||||    ||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4452026 taatcatacatcttattgtacaccatatgcattagggatattttggtaaattcatctcacaaccatactttctctttcatctcctctcccttttccttcc 4451927  T
Q  183 cacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatag 229  Q
    |||||||||||||||||||||| ||||||| || ||||| |||||||    
T  4451926 cacatgtcaggattttgtgtgggtgtaagaagtatattgccacatag 4451880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 18491704 - 18491873
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||||||||| | | |||||||||   |||| |||| | | ||||| |||| |||||||||||||||||||| ||||    
T  18491704 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctcacaaccatacttactct 18491803  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||    
T  18491804 ttcatctcctatcccttttccttgccacatgttaggattttgtgtgggtgtaagaggtgtattgccacat 18491873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 34895842 - 34895673
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    |||||| |||| ||| |||||| |||||||| | | | |||||||||  ||||| |||||||| || || |||| |||||||||||| |||||||| |||    
T  34895842 aggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatct 34895743  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  34895742 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacat 34895673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 61 - 227
Target Start/End: Complemental strand, 4299518 - 4299352
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctttc 160  Q
    ||||||||  || ||||||||||||||||| | | ||||||||| |||||| ||||  || ||||| |||| |||||||||||| ||||||| ||||||     
T  4299518 aaaatgttatatgaacaccctttaatcatacaccctattgtacactccatgcattaatgacattttggtaaattcatctcacaatcatacttactcttta 4299419  T
Q  161 atctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||    
T  4299418 atctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagagatgtattgccacat 4299352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 12531699 - 12531601
Alignment:
Q  123 ttttagtaatttcatctcacaaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattg 221  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12531699 ttttggtaaattcatctcacaaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattg 12531601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 74 - 231
Target Start/End: Original strand, 14285691 - 14285848
Alignment:
Q  74 aacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctttcatctcctctccct 173  Q
    ||||||||||||||||| | | |||||||||  | || |||||  |||||||| |||| ||||||||| |  ||||||||||||||||||||||||||||    
T  14285691 aacaccctttaatcatacaccctattgtacaccctatatattaaagatattttggtaaattcatctcagagtcatactttctctttcatctcctctccct 14285790  T
Q  174 tttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacataggg 231  Q
    ||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  14285791 tttccttaccacatgtgaggattttatgtgggtgtaagaggtgtattgtcacataggg 14285848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 30838631 - 30838731
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| |  || |||||||||||||  |||||||||||||||||||| |||| ||||||||||||||| ||||| |||    
T  30838631 aggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatct 30838730  T
Q  158 t 158  Q
    |    
T  30838731 t 30838731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 158
Target Start/End: Complemental strand, 43490499 - 43490402
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||| ||| ||||||||||| || || |||  |||||||| || |||||||||||||||||| |||| ||||||||| ||||| ||||| ||||    
T  43490499 aaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggtaagttcatctcataaccacactttatctt 43490402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 6518478 - 6518426
Alignment:
Q  175 ttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||| |||||    
T  6518478 ttccttgccacatgtcaggattttgtgtgggtgtaaaaggtgtattgacacat 6518426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 158
Target Start/End: Original strand, 1750414 - 1750513
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||| || || | |  ||||||||  | |||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  1750414 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 1750513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 19047158 - 19047256
Alignment:
Q  60 gaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||| ||| ||||||||||| || || ||   ||||||||  | |||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  19047158 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 19047256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 43335825 - 43335764
Alignment:
Q  97 attgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||| |||||||||||||||||||| |||| ||||||||||||| | ||||| ||||    
T  43335825 attgtacatcccatgtattagggatattttggtaagttcatctcacaactacactttatctt 43335764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 4764827 - 4764727
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| |||||||||| |||| || || | | |||||||||  ||||||||||   ||||||| |||| ||||||||||||||| ||||| |||    
T  4764827 aggaaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaaattcatctcacaaccacactttatct 4764728  T
Q  158 t 158  Q
    |    
T  4764727 t 4764727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 12302354 - 12302254
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| |  || | |  ||||||||  | |||||||||||||||||| |||| ||||||||||||||| ||||| |||    
T  12302354 aggaaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacactttatct 12302255  T
Q  158 t 158  Q
    |    
T  12302254 t 12302254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 158
Target Start/End: Complemental strand, 13780835 - 13780736
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| |||||||||  |||| ||| | | || ||||||||  ||||  ||||||||||||||  ||| ||||||||||||||| ||||||||||    
T  13780835 ggaaaatgttacatcaacacattttattcacacacctcattgtacaccccatacattagggatattttgataaattcatctcacaaccacactttctctt 13780736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 4764706 - 4764658
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||| |||||| ||||||||||||||||| |||||||||| |||||    
T  4764706 ttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgccacat 4764658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 144
Target Start/End: Complemental strand, 6518566 - 6518484
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaa 144  Q
    |||||||| ||| |||||| |||||||||| |   |||||||||  ||||| |||||||| ||||| |||||||||||||||||    
T  6518566 aaaatgttacatgaacacc-tttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaa 6518484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 158
Target Start/End: Original strand, 16096747 - 16096846
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||| || || | |  ||| ||||  |||||||||||||||||||| || | || |||||||||||| ||||| ||||    
T  16096747 ggaaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtattagggatattttggtgagttaatctcacaaccacactttatctt 16096846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 43335743 - 43335688
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtgg 234  Q
    ||||||| |||||| ||||||||||||||||| |||| ||||| ||||| ||||||    
T  43335743 ttgccacgtgtcagaattttgtgtggatgtaaaaggtatattgccacatggggtgg 43335688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 158
Target Start/End: Complemental strand, 34817875 - 34817777
Alignment:
Q  60 gaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||| ||| ||||||||||| ||| | | || ||||||||  ||||| | || | | ||||| |||| ||||||||||||||| ||||||||||    
T  34817875 gaaaatgttacatgaacaccctttattcacacacctcattgtacaccccatgcactacgcacattttggtaaattcatctcacaaccacactttctctt 34817777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 42849910 - 42849864
Alignment:
Q  107 ccatgtattagggatattttagtaatttcatctcacaaccatacttt 153  Q
    ||||||||||||||||||||  ||| ||||||||||||||| |||||    
T  42849910 ccatgtattagggatattttgataagttcatctcacaaccacacttt 42849864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 61 - 247
Target Start/End: Complemental strand, 45817 - 45634
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctttc 160  Q
    |||||||| ||| ||||||||||||||||| | | |||||||||| | |||||||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  45817 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctttc 45718  T
Q  161 atctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtggatgtacatgtatc 247  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||| |||||  ||||||||||||    
T  45717 atctcctctcccttttccttgccacatgtcaggattttatgtgggtgtaagaggtgtattgccacat-gggtg--tgtacatgtatc 45634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 61 - 247
Target Start/End: Original strand, 27441544 - 27441727
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctttc 160  Q
    |||||||| ||| ||||||||||||||||| | | |||||||||| | |||||||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  27441544 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctttc 27441643  T
Q  161 atctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtggatgtacatgtatc 247  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||| |||||  ||||||||||||    
T  27441644 atctcctctcccttttccttgccacatgtcaggattttatgtgggtgtaagaggtgtattgccacat-gggtg--tgtacatgtatc 27441727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 33242402 - 33242571
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| |||||| |||||||||| | |||||||||||  |||||||||| ||| ||||| |||| |||||||||||| ||||||||||||    
T  33242402 aggaaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctcacaaacatactttctct 33242501  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  33242502 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacat 33242571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 58 - 231
Target Start/End: Complemental strand, 31109323 - 31109150
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||||||||| |||  ||| ||||  ||||| | ||||||||||||  ||| |||| || || |||| | |||||||    
T  31109323 aggaaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatattttgataaattcaacttacgaccacattttctct 31109224  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacataggg 231  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  31109223 ttcatctcctctccctcttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacataggg 31109150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 59 - 227
Target Start/End: Original strand, 33253913 - 33254082
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| |||||| |||||||| | | | |||||||||  ||||| |||||||| || || |||| |||||||||||| |||||||| ||||    
T  33253913 ggaaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatctt 33254012  T
Q  159 t-catctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    | |||||||||||||||||| |||||||||||| ||||||||||||| | ||| |||||||||| |||||    
T  33254013 ttcatctcctctcccttttctttgccacatgtccggattttgtgtgggtataaaaggtgtattgccacat 33254082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 3213399 - 3213499
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| ||||| |||| ||||||||  |||||||||| ||||||||| |||| ||||| ||||||||||||||| |||    
T  3213399 aggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaaccatactttatct 3213498  T
Q  158 t 158  Q
    |    
T  3213499 t 3213499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 158
Target Start/End: Complemental strand, 13743321 - 13743222
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| |||||| |||| ||||| |||  ||||||||  |||||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  13743321 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 13743222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 158
Target Start/End: Complemental strand, 13748821 - 13748722
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| |||||| |||| ||||| |||  ||||||||  |||||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  13748821 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 13748722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 158
Target Start/End: Original strand, 30014343 - 30014442
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||| || || |||  ||| ||||| |||||||||||| ||||||| |||| ||||||||||||||||||||| ||||    
T  30014343 ggaaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaagttcatctcacaaccatactttatctt 30014442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 7273436 - 7273336
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| || || | |||||||||||  ||||||||||| |||||||| |||| |||||||||||| || ||||| |||    
T  7273436 aggaaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctcacaatcacactttatct 7273337  T
Q  158 t 158  Q
    |    
T  7273336 t 7273336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 9698434 - 9698334
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| || || |||  ||||||||  | |||||||||||||||||| |||| ||||||||||||||| ||||| |||    
T  9698434 aggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatct 9698335  T
Q  158 t 158  Q
    |    
T  9698334 t 9698334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 153
Target Start/End: Complemental strand, 24204085 - 24203993
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatacttt 153  Q
    |||||||| ||| |||||| |||| || || | | ||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||||    
T  24204085 aaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctcacaaccacacttt 24203993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 26466798 - 26466898
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| || || | |  |||||||| |||||||||||||| |||||| |||| ||||||||||||||| ||||| |||    
T  26466798 aggaaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaagttcatctcacaaccacactttatct 26466897  T
Q  158 t 158  Q
    |    
T  26466898 t 26466898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 26670110 - 26670010
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| || || | || ||||||||   ||||||||||||||||||| |||| ||||||||||||||| ||||| |||    
T  26670110 aggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatct 26670011  T
Q  158 t 158  Q
    |    
T  26670010 t 26670010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 153
Target Start/End: Original strand, 7367548 - 7367643
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatacttt 153  Q
    |||||||||||  || |||| | |||| ||||| | || ||||||||| |||||||||||||||||||| |||| ||||||||||||||| |||||    
T  7367548 aggaaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccacacttt 7367643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 21279928 - 21280028
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| |  || ||   |||| |||| |||||||||||||||||||| |||| ||||||||||||||| ||||| |||    
T  21279928 aggaaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaaattcatctcacaaccacactttatct 21280027  T
Q  158 t 158  Q
    |    
T  21280028 t 21280028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 21293778 - 21293678
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| ||||| || | | ||||||  |||||||||| ||||||||| |||| ||||| ||||||||| ||||| |||    
T  21293778 aggaaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggtaaattcatttcacaaccacactttatct 21293679  T
Q  158 t 158  Q
    |    
T  21293678 t 21293678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 7292746 - 7292846
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||  |||||| |||| ||||| | || ||| ||||  | |||||||||||||||||| |||| ||||||||||||||| ||||| |||    
T  7292746 aggaaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatct 7292845  T
Q  158 t 158  Q
    |    
T  7292846 t 7292846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 24203967 - 24203919
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||| |||||| |||||||||||||||||  |||||||||||||||    
T  24203967 ttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgtcacat 24203919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 26466919 - 26466974
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtgg 234  Q
    ||||||| | |||||||||||| ||| ||||| |||||||||| ||||||||||||    
T  26466919 ttgccacgtatcaggattttgtatgggtgtaaaaggtgtattgccacatagggtgg 26466974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 30736102 - 30736150
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||| |||||| |||||||||||||||||  ||||||||| |||||    
T  30736102 ttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacat 30736150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 59 - 221
Target Start/End: Original strand, 34791829 - 34791991
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||||||||| | | ||||||| |   |||| |||||||| |||||| ||||||||||||||||||||||||||||||    
T  34791829 ggaaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacattttaataatttcatctcacaaccatactttctctt 34791928  T
Q  159 tcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattg 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34791929 tcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattg 34791991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 10457993 - 10457824
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| |||||| |||||||||| | | |||||||||  ||||| |||| ||||||||| |||| || ||||||||||||||||||||||    
T  10457993 aggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaatttatctcacaaccatactttctct 10457894  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10457893 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgccacat 10457824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 25996267 - 25996440
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||||||||| |||||||||||||  |||| ||||| ||| ||||| |||| ||||||||||||||||| |||||||    
T  25996267 aggaaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatattttctct 25996366  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacataggg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| ||||||    
T  25996367 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtttaagaggtatattgtcatataggg 25996440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 58 - 228
Target Start/End: Complemental strand, 4190366 - 4190196
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||||||||| | | |||||||||    ||||||||| |||||||| |||| |||||||||||||||||||||||||    
T  4190366 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctcacaaccatactttctct 4190267  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacata 228  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  4190266 ttcatctcctttcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacata 4190196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 9434123 - 9434292
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||||||||| |   |||||||||  ||||| |||||||| ||||| ||||||||||||||||||||||||||||||    
T  9434123 aggaaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctct 9434222  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||    
T  9434223 ttcatctcctctcacttttccttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgccacat 9434292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 59 - 233
Target Start/End: Original strand, 51757593 - 51757767
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||| || ||| ||||||||||||||||| | | |||||||||   |||| |||| ||| |||||||||||||||||||||||||||||||||||||    
T  51757593 ggaaaatattacataaacaccctttaatcatacaccctattgtacacctcatgcattatggacattttagtaatttcatctcacaaccatactttctctt 51757692  T
Q  159 tcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtg 233  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||| ||||| ||||| |||||    
T  51757693 tcatctcctcttccttttccttgccacatgtcaggattgtgtgtgggtgtaagaggtatattgccacatggggtg 51757767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 52628078 - 52627915
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| | | ||||||||||||||||| ||| |||||||||   |||| |||| | ||||||| |||| |||||||||||| ||||||||||||    
T  52628078 aggaaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctcacaatcatactttctct 52627979  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattg 221  Q
    ||||||| |||||||||||||| |||||||||||||||||||| | | | ||||||||||||||    
T  52627978 ttcatcttctctcccttttcctggccacatgtcaggattttgtataggtataagaggtgtattg 52627915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 46941052 - 46941152
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| || || |||| ||||||||  |||||||||||||||||||| |||| ||||||||||||||| ||||| |||    
T  46941052 aggaaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatct 46941151  T
Q  158 t 158  Q
    |    
T  46941152 t 46941152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 153
Target Start/End: Complemental strand, 45127028 - 45126934
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatacttt 153  Q
    |||||||||| ||| ||||||||||| ||||| |||  ||||||||  |||||||||||||||||||| |||| ||||||||||||||| |||||    
T  45127028 ggaaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacacttt 45126934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 53273785 - 53273684
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    |||||||||||  || |||| | |||| || |||| || ||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||| |||    
T  53273785 aggaaaatgttatatgaacatcatttattcctatacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccatactttatct 53273686  T
Q  158 tt 159  Q
    ||    
T  53273685 tt 53273684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 40480750 - 40480848
Alignment:
Q  60 gaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||| ||| ||||||||||| ||||||  |  ||||||||| | |||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  40480750 gaaaatgttacatgaacaccctttattcatatgccccattgtacatcctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 40480848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 40808864 - 40808964
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| |||||||||| |||| || || | |  ||||||||  |||||||||||||||||||| |||| ||||||||||||||| ||||| |||    
T  40808864 aggaaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatct 40808963  T
Q  158 t 158  Q
    |    
T  40808964 t 40808964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 42100688 - 42100776
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaacca 147  Q
    |||||||||| ||| ||||||||||| || || | || ||||||||  |||||||||||||||||||| |||| |||||||||||||||    
T  42100688 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaacca 42100776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 54237097 - 54237195
Alignment:
Q  60 gaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||| ||| ||||||||||| || || |||  ||||||||  | |||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  54237097 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 54237195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 158
Target Start/End: Original strand, 25413669 - 25413780
Alignment:
Q  47 gtatatattacaggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaacc 146  Q
    ||||| |||| ||||||||||| ||| ||||||||||| || || | |  ||||||||    |||||||||||||||||| |||| ||||||||||||||    
T  25413669 gtatagattataggaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctcacaacc 25413768  T
Q  147 atactttctctt 158  Q
    | ||||| ||||    
T  25413769 acactttatctt 25413780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 158
Target Start/End: Complemental strand, 42394518 - 42394420
Alignment:
Q  60 gaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||| ||| ||||||||||| || || ||   ||||||||  | |||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  42394518 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 42394420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 47191126 - 47191027
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| || || | || ||||||||  ||||||||||| ||||||||  ||| ||||||||||||||| ||||| |||    
T  47191126 aggaaaatgttacatgaacaccctttattcctacacctcattgtacac-ccatgtattagagatattttgataagttcatctcacaaccacactttatct 47191028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 54246249 - 54246149
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| || || | |  ||||||||  | ||||||||| |||||||| |||| ||||||||||||||| ||||| |||    
T  54246249 aggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctcacaaccacactttatct 54246150  T
Q  158 t 158  Q
    |    
T  54246149 t 54246149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 40808985 - 40809040
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtgg 234  Q
    ||||||| |||||| ||||||||||||||||| |||||||||| ||||| ||||||    
T  40808985 ttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgccacatggggtgg 40809040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 24688452 - 24688403
Alignment:
Q  109 atgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  24688452 atgtattagggatattttggtaagttcatctcacaaccacactttatctt 24688403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 27748613 - 27748662
Alignment:
Q  109 atgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||||||||||| |||| ||||||||||||| ||||||| ||||    
T  27748613 atgtattagggatattttggtaagttcatctcacaacaatactttatctt 27748662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 53581920 - 53581859
Alignment:
Q  97 attgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||| | ||||||||||||||||||  ||| ||||||||||||||| ||||| ||||    
T  53581920 attgtacatcctatgtattagggatattttgataagttcatctcacaaccacactttatctt 53581859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 158
Target Start/End: Original strand, 36150130 - 36150229
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| || |||||||| ||||| | |  ||| ||||  | |||||| ||||||||||| |||| ||||||||||||||| ||||| ||||    
T  36150130 ggaaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaagttcatctcacaaccacactttatctt 36150229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 36150250 - 36150305
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtgg 234  Q
    ||||||| |||||| |||||||||||||||||  ||||||||| ||||| ||||||    
T  36150250 ttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatggggtgg 36150305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 53581838 - 53581783
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtgg 234  Q
    ||||||| |||||| ||||||||||| |||||  ||||||||| ||||||||||||    
T  53581838 ttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatagggtgg 53581783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 19148829 - 19148883
Alignment:
Q  109 atgtattagggatattttagtaatttcatctcacaaccatactttctctttcatc 163  Q
    |||||||||||| |||||||||| || ||||||||| || |||||| ||||||||    
T  19148829 atgtattagggacattttagtaaatttatctcacaatcacactttcactttcatc 19148883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 51249357 - 51249407
Alignment:
Q  108 catgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||| |||| ||||||||| |||| ||||||||||||||| ||||||||||    
T  51249357 catgcattaaggatattttggtaaattcatctcacaaccacactttctctt 51249407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 52629878 - 52629927
Alignment:
Q  109 atgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||| ||||||||| |||| ||||||||||||||| ||||| ||||    
T  52629878 atgtattaaggatatttttgtaagttcatctcacaaccacactttatctt 52629927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 1078338 - 1078386
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||| |||||| |||||||||||||||||  ||||||||| |||||    
T  1078338 ttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacat 1078386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 11064699 - 11064655
Alignment:
Q  182 ccacatgtcaggattttgtgtggatgtaagaggtgtattgtcaca 226  Q
    ||||||||||  ||||||||||| |||||| ||||||||||||||    
T  11064699 ccacatgtcaaaattttgtgtgggtgtaaggggtgtattgtcaca 11064655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 19148888 - 19148936
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    |||||| ||||||| ||||||||||| |||||| ||||||||| |||||    
T  19148888 ttgccatatgtcagaattttgtgtgggtgtaagtggtgtattgccacat 19148936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 59 - 221
Target Start/End: Complemental strand, 17619252 - 17619090
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| |||||| |||||||||| | | |||||||||  ||||| |||| ||||||||| |||| ||||||||||||||||||||||||||    
T  17619252 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 17619153  T
Q  159 tcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattg 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17619152 tcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattg 17619090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 59 - 227
Target Start/End: Complemental strand, 55272476 - 55272308
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| |||| |||||||||||| |   |||||||||  ||||| |||| ||||||||| |||| ||||||||||||||||||||||||||    
T  55272476 ggaaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 55272377  T
Q  159 tcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  55272376 tcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacat 55272308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 711959 - 712128
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||||||||| | | |||||||||  | ||| |||| ||||||||| |||| |||||||||||| ||||||||||||    
T  711959 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctcacaaacatactttctct 712058  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  712059 ttcatctcctcttccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacat 712128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 61 - 227
Target Start/End: Original strand, 38851515 - 38851681
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctttc 160  Q
    |||||||| ||| || | |||||||||||| ||| || |||||| |||||| |||| ||| |||||  ||| ||||||||||||||||||||||||||||    
T  38851515 aaaatgttacatgaatatcctttaatcatacatcataatgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctctttc 38851614  T
Q  161 atctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  38851615 atctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagagatgtattgccacat 38851681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 58 - 231
Target Start/End: Complemental strand, 960971 - 960798
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||||||||| |   |||||||||  | ||  |||||||| ||||| |||| ||||||| | || | ||||||||||    
T  960971 aggaaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaaattcatcttataatcgtactttctct 960872  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacataggg 231  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  960871 ttcatctcctatcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgtcacataggg 960798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 48435680 - 48435511
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    |||||| |||| ||| |||||| |||||||| | | | |||||||||  ||||| |||||||| || || |||| |||||||||||| |||||||| |||    
T  48435680 aggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatct 48435581  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  48435580 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagagatgtattgtcacat 48435511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 61 - 227
Target Start/End: Original strand, 35037007 - 35037173
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctttc 160  Q
    |||||||| ||| | |||||||||| |||| |   |||||||||  ||||| |||| ||||||||| |||| ||||||||||||||||| ||| ||||||    
T  35037007 aaaatgttacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatattttttctttc 35037106  T
Q  161 atctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
     ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  35037107 ttctcctctcccttttccttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacat 35037173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 32728356 - 32728525
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| |||| |||||||||||| | | |||||||||  ||||| |||| ||| |||||||||| |||||||||||| ||||||||||||    
T  32728356 aggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctcacaatcatactttctct 32728455  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    |||||||||||||||||||||||||||||| | | |||||| ||||  |||||||||||||||| |||||    
T  32728456 ttcatctcctctcccttttccttgccacatattaagattttttgtgcgtgtaagaggtgtattgccacat 32728525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 19879991 - 19880122
Alignment:
Q  96 tattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctttcatctcctctcccttttccttgccacatgtcaggat 195  Q
    |||||||||  |||| ||||| ||| ||||| |||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19879991 tattgtacaccccatatattatggacattttggtaaattcatctcacaatcatactttctctttcatctcctttcccttttccttgccacatgtcaggat 19880090  T
Q  196 tttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||||| |||||||||||||||| |||||    
T  19880091 tttgtgtgggtgtaagaggtgtattgccacat 19880122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 58 - 220
Target Start/End: Complemental strand, 46827807 - 46827645
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||||||||| |   |||||||||  | ||| |||| | |  |||| |||| || ||||||||| |||| |||||||    
T  46827807 aggaaaatgttacatgaacaccctttaatcatacactctattgtacacccaatgcattaagaacgttttggtaaatttatctcacaaacatattttctct 46827708  T
Q  158 ttcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtatt 220  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||| ||||||    
T  46827707 ttcatctcccctccctttttcttgccacatgtcaggattttgtgtgggtgtaagagatgtatt 46827645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 61 - 227
Target Start/End: Complemental strand, 3756344 - 3756184
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctttc 160  Q
    |||||||| ||| ||||||||||||||||| | | |||||||||  ||||| |||| |||||||||||||| || ||||||||| |||||||| ||||||    
T  3756344 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaaatttatctcacaatcatacttt-tctttc 3756246  T
Q  161 atctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    |||| |     |||||||||||||||||||| |||||| ||||| |||||||| ||||||| |||||    
T  3756245 atcttc-----cttttccttgccacatgtcatgattttatgtgggtgtaagagttgtattgccacat 3756184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 107 - 232
Target Start/End: Complemental strand, 36004168 - 36004043
Alignment:
Q  107 ccatgtattagggatattttagtaatttcatctcacaaccatactttctctttcatctcctctcccttttccttgccacatgtcaggattttgtgtggat 206  Q
    |||| ||||||||| |||||  ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| ||  |    
T  36004168 ccatatattagggacattttgataaatttatctcacaaccatactttctctttcatctcctctcccttttccttgccacatatcaaaattttgtttgagt 36004069  T
Q  207 gtaagaggtgtattgtcacatagggt 232  Q
    ||||||| ||||||| ||||| ||||    
T  36004068 gtaagagatgtattgccacatggggt 36004043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 153
Target Start/End: Complemental strand, 48463551 - 48463456
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatacttt 153  Q
    ||||||||||| ||| |||||| |||| ||||| || | ||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||    
T  48463551 aggaaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccatacttt 48463456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 55966447 - 55966358
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaacca 147  Q
    ||||||||||| ||| ||||||||||| ||||| |||  ||||||||| |||||||||||||||||||| |||| |||||||||||||||    
T  55966447 aggaaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctcacaacca 55966358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 33703140 - 33703240
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| |  || |||||||||||||  |||||||||||||||||||| |||| ||||||||||||||| ||||| |||    
T  33703140 aggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatct 33703239  T
Q  158 t 158  Q
    |    
T  33703240 t 33703240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 158
Target Start/End: Complemental strand, 27893940 - 27893843
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||| ||| |||||| |||| ||||| |||  ||||||||  |||||||||||||||||||| |||||||||||||||||||| ||||| ||||    
T  27893940 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaaccacactttatctt 27893843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 153
Target Start/End: Original strand, 27864563 - 27864658
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatacttt 153  Q
    ||||||||||| ||| |||||| |||| ||||| |||  ||||||||  |||||||||||||||||||| |||| ||||||||||||||| |||||    
T  27864563 aggaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacacttt 27864658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 158
Target Start/End: Original strand, 35017733 - 35017831
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| ||||||||||| || ||||||| ||||||||  ||||||| |||||||||||| |||| ||||||||||||||| ||||| ||||    
T  35017733 ggaaaatgttacatgaacaccctttattcctatatctcattgtacaccccatgta-tagggatattttggtaagttcatctcacaaccacactttatctt 35017831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 28982923 - 28982835
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaacc 146  Q
    ||||||||||| ||| ||||||||||| |  || | | |||||||||| |||| ||||||||||||||| |||| ||||||||||||||    
T  28982923 aggaaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttcatctcacaacc 28982835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 43949863 - 43949802
Alignment:
Q  97 attgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||  |||||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  43949863 attgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 43949802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 23204875 - 23204779
Alignment:
Q  62 aaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||| ||| ||||| ||||| || || |||  ||||||||| | |||||||||||||||||| |||| ||||| ||||||||| ||||| ||||    
T  23204875 aaatgttacatgaacactctttattcctacatcccattgtacatcctatgtattagggatatttttgtaagttcatgtcacaaccacactttatctt 23204779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 28988472 - 28988572
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| ||||| | || ||||||||  ||||| | |||||| |||||  ||| ||||||||| ||||| |||||||||    
T  28988472 aggaaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttgataaattcatctcataaccacactttctct 28988571  T
Q  158 t 158  Q
    |    
T  28988572 t 28988572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 28982802 - 28982747
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtgg 234  Q
    ||||||| |||||| ||||||||||||||||| |||||||||| ||||| ||||||    
T  28982802 ttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgccacatggggtgg 28982747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 158
Target Start/End: Complemental strand, 45490413 - 45490314
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| |||||  |||| | ||| |||  ||||||||   ||||||||||||||| |||||||| ||||||||||||||| ||||| ||||    
T  45490413 ggaaaatgttacatgaacacattttatttatacatccaattgtacacctcatgtattagggatactttagtaaattcatctcacaaccacactttatctt 45490314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 39631150 - 39631200
Alignment:
Q  108 catgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  39631150 catgtattagggatattttggtaagttcatctcacaaccacactttatctt 39631200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 1771367 - 1771278
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaacca 147  Q
    ||||||||||| ||| ||||||||||| || || | |  ||||||||  ||||||||||| ||||||||  ||| |||||||||||||||    
T  1771367 aggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctcacaacca 1771278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 158
Target Start/End: Original strand, 43735744 - 43735841
Alignment:
Q  61 aaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||| || ||| |||| |||||| || || |||| ||| ||||||||||||||||| ||||||||  ||| |||||||||||| || ||||| ||||    
T  43735744 aaaatattacatgaacatcctttattcctacatctcattatacattccatgtattagagatattttgataagttcatctcacaatcacactttatctt 43735841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 23035979 - 23036079
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| |||  |||||| || || | | |||||||||  | || ||||||||||||||| |||| ||||||||||||||| ||||| |||    
T  23035979 aggaaaatgttacatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttttgtaagttcatctcacaaccacactttatct 23036078  T
Q  158 t 158  Q
    |    
T  23036079 t 23036079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 35017852 - 35017907
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtgg 234  Q
    ||||||| |||||| ||||||||||||||||| || ||||||| ||||| ||||||    
T  35017852 ttgccacgtgtcagaattttgtgtggatgtaaaagatgtattgccacatggggtgg 35017907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 27550358 - 27550408
Alignment:
Q  108 catgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||||||||||||| |||| ||||||| ||||||| ||||| ||||    
T  27550358 catgtattagggatattttggtaagttcatcttacaaccacactttatctt 27550408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 31680955 - 31681001
Alignment:
Q  112 tattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  31680955 tattagggatattttggtaagttcatctcacaaccacactttatctt 31681001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 41878407 - 41878505
Alignment:
Q  60 gaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||| ||| ||||| ||||| ||||| | || ||||||||  | ||  ||||||||||||||  ||| ||||||||||||||| || |||||||    
T  41878407 gaaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttcatctcacaaccaaaccttctctt 41878505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 43514748 - 43514698
Alignment:
Q  97 attgtacattccatgtattagggatattttagtaatttcatctcacaacca 147  Q
    |||||||| | |||||||||||| |||||| |||| |||||||||||||||    
T  43514748 attgtacacttcatgtattagggttattttggtaagttcatctcacaacca 43514698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 12496994 - 12497055
Alignment:
Q  97 attgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||| ||||||||||| |||||||| |||| ||||||| |||| || ||||| ||||    
T  12496994 attgtacatcccatgtattagagatattttggtaagttcatcttacaatcacactttatctt 12497055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 21687056 - 21687105
Alignment:
Q  109 atgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||  |||||||||||| ||||||||| ||||||||||| ||||    
T  21687056 atgtattagaaatattttagtaagttcatctcataaccatactttatctt 21687105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 25051743 - 25051792
Alignment:
Q  109 atgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||||||||||| |||| |||||||||||| || ||||| ||||    
T  25051743 atgtattagggatattttggtaagttcatctcacaatcacactttatctt 25051792  T

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Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 27316798 - 27316714
Alignment:
Q  74 aacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||||| || || | || ||| ||||  |||||||||| ||||||||| |||| ||||||||| ||||| ||||| ||||    
T  27316798 aacaccctttattcctacacctcattatacaccccatgtattaaggatattttggtaagttcatctcataaccacactttatctt 27316714  T

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Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 27864687 - 27864739
Alignment:
Q  182 ccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtgg 234  Q
    ||||||||||| ||||| |||||||||||  ||||||||| ||||| ||||||    
T  27864687 ccacatgtcagaattttatgtggatgtaaagggtgtattgccacatggggtgg 27864739  T

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Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 41848095 - 41848139
Alignment:
Q  183 cacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    |||||||||| |||||| ||||||||||| ||||||||| |||||    
T  41848095 cacatgtcagaattttgcgtggatgtaaggggtgtattgccacat 41848139  T

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Target: scaffold0100 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 59 - 227
Target Start/End: Complemental strand, 35556 - 35388
Alignment:
Q  59 ggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    |||||||||| ||| |||||| |||||||||| | | |||||||||  ||||| |||||||| || || |||| ||||||||||||||||||||||||||    
T  35556 ggaaaatgttacataaacaccatttaatcatacaccatattgtacaccccatgcattagggacatattggtaaattcatctcacaaccatactttctctt 35457  T
Q  159 tcatctcctctcccttttccttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacat 227  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||| |||||||||||||||| |||||    
T  35456 tcatctcctctcccttttccttgccgcatgtctggattttgtatgggtgtaagaggtgtattgccacat 35388  T

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Target: scaffold0119 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 684 - 784
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| || || | || ||||||||   ||||||||||||||||||| |||| ||||||||||||||| ||||| |||    
T  684 aggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatct 783  T
Q  158 t 158  Q
    |    
T  784 t 784  T

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Target: scaffold0187 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 14289 - 14189
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| |  || | |  ||||||||| | |||||||||||||||||| |||| ||||||||||||||| ||||| |||    
T  14289 aggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcacaaccacactttatct 14190  T
Q  158 t 158  Q
    |    
T  14189 t 14189  T

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Target: scaffold0187; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 24617 - 24517
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||| ||| ||||||||||| |  || | |  ||||||||| | |||||||||||||||||| |||| ||||||||||||||| ||||| |||    
T  24617 aggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcacaaccacactttatct 24518  T
Q  158 t 158  Q
    |    
T  24517 t 24517  T

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Target: scaffold0187; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 14169 - 14114
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtgg 234  Q
    ||||||| |||||| |||||||||||||||||  ||||||||| ||||| ||||||    
T  14169 ttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatggggtgg 14114  T

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Target: scaffold0187; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 24497 - 24442
Alignment:
Q  179 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacatagggtgg 234  Q
    ||||||| |||||| |||||||||||||||||  ||||||||| ||||| ||||||    
T  24497 ttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatggggtgg 24442  T

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Target: scaffold0038 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 112656 - 112754
Alignment:
Q  60 gaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||| ||| ||||||||||| || || ||   ||||||||  | |||||||||||||||||| |||| ||||||||||||||| ||||| ||||    
T  112656 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 112754  T

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Target: scaffold0385 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 11250 - 11350
Alignment:
Q  58 aggaaaatgttgcatcaacaccctttaatcatatatcttattgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctct 157  Q
    ||||||||||  ||| ||||| ||||| ||||| | |  ||||||||  |||| ||||||||||||||| |||| ||||||||||||||| ||||| |||    
T  11250 aggaaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaagttcatctcacaaccacactttatct 11349  T
Q  158 t 158  Q
    |    
T  11350 t 11350  T

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Target: scaffold0157 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 23483 - 23422
Alignment:
Q  97 attgtacattccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 158  Q
    ||||||||| ||||||||||| |||||||| |||| ||||||| |||| || ||||| ||||    
T  23483 attgtacatcccatgtattagagatattttggtaagttcatcttacaatcacactttatctt 23422  T

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