View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3953_high_5 (Length: 250)
Name: NF3953_high_5
Description: NF3953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3953_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 25955957 - 25955714
Alignment:
| Q |
1 |
ttgtggatatttatactcaaaaactaggttaaaacctttgttagatgatgaagatgtcaaaacttggaaaatgaaaaacaacaaaatgtaccatactact |
100 |
Q |
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| T |
25955957 |
ttgtggatatttatactcaaaaactaggttaaaacctttgttagatgaggaagatgtcaaaacttggaaaatgaaaaacaacaaaatgtaccctactact |
25955858 |
T |
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| Q |
101 |
gatcagtggagttggttggttatgttgtaccagtgtttgggaagagcaaatgataagat-nnnnnnntcaaatgctttttggtctcctaattgaatgaaa |
199 |
Q |
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| T |
25955857 |
gatcagtggagttggttggttatgttgtaccagtg-ttgggaagagcaaatgataaaataaaaaaaatcaaatgctttttggtctcctaa-tgaatgaaa |
25955760 |
T |
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| Q |
200 |
aaggaaaatatatcccaatatgaagaaatgtgttttctgtgctgct |
245 |
Q |
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| T |
25955759 |
aaggaaaatatatcccaatatgaagaaatgtgttttctttgctgct |
25955714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 39776677 - 39776723
Alignment:
| Q |
8 |
tatttatactcaaaaactaggttaaaacctttgttagatgatgaaga |
54 |
Q |
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| T |
39776677 |
tatttatactcaaaaactaggttaaaatccttgttgaatgatgaaga |
39776723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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