View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3953_high_6 (Length: 247)
Name: NF3953_high_6
Description: NF3953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3953_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 25955975 - 25956205
Alignment:
| Q |
1 |
catagttgtgaacaatgtcaaattagaaaaggggagtaacaaaacacataccaccttcattttttcttattagttcatacatattgaatacaagagttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||||||||| |
|
|
| T |
25955975 |
catagttgtgaacaatgtcaaattagaaaaggggagtaacaaaacacataccaccttcatttttacttttaagttcatacatatttaatacaagagttag |
25956074 |
T |
|
| Q |
101 |
tagccactaatctataactcctacaccccattactatacctcactttttgcacccatagtttcatccctctcatctatactccaaaatcactcatgtcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25956075 |
tagccactaatctataactcctacaccccattactatacctcactttttgcacccatagtttcatccctctcatctatactccaaaatcactcatgtcaa |
25956174 |
T |
|
| Q |
201 |
ataacatcatcttcatcgaaataataaacat |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
25956175 |
ataacatcatcttcatcgaaataataaacat |
25956205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University