View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3953_low_1 (Length: 820)
Name: NF3953_low_1
Description: NF3953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3953_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 751; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 751; E-Value: 0
Query Start/End: Original strand, 18 - 812
Target Start/End: Complemental strand, 8927295 - 8926501
Alignment:
| Q |
18 |
gaatttttattaataaagtggtacgaccattttacaatggtctttagggaattcgaactcagcacattgaagtagcgtctcaagtgtatctgcacttgac |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8927295 |
gaatttttattaataaagtggtacgaccattttacaatggtctttagggaattcgaactcagcacattgaagtagcgtctcaagtgtatctgcacttgac |
8927196 |
T |
|
| Q |
118 |
catgattctttttaatataaaggattgcgacgcgatggttaatgtgatttaaaaccttatgaacatgtatacattaaattgttacctcaagttggtcacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8927195 |
catgattctttttaatataaaggattgcgacgcgatggttaatgtgatttaaaatcttatgaacatgtatacattaaattgttacctcaagttggtcacc |
8927096 |
T |
|
| Q |
218 |
aaggttgatgacaatagagtgaggcattggagggacatcaatccattggtcatctttgagaagctgaagtccactgactttgtcatcttggaagagaagg |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8927095 |
aaggttgatgacaatagagtgaggcattggagggacatcaatccattggtcatctttgagaagctgaagtccactgactttgtcatcttggaagagaagg |
8926996 |
T |
|
| Q |
318 |
atgatgccaccagcatctgtgtgcgctctaagtcccttgatgagatcaggcttaggacaaggagggtagttactaacttttgtaccaaaatttggaccct |
417 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926995 |
atgatgccaccagcatctgtgtgtgctctaagtcccttgatgagatcaggcttaggacaaggagggtagttactaacttttgtaccaaaatttggaccct |
8926896 |
T |
|
| Q |
418 |
ttgatccataaaacactttcttcaagtaccctttctcaagttcaagattctcacacaataagtcaagaagttcctctgccagtttctccaatttctctgc |
517 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926895 |
ttgatccataaaacactttcttcaagtaccctttctcaagtccaagattctcacacaataagtcaagaagttcctctgccagtttctccaatttctctgc |
8926796 |
T |
|
| Q |
518 |
aaattccttcattgtcttcctgaaattcacaaagatataaatatatgagtttaagtatatgattttatatgtgtgactttagaaataattataatagtaa |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926795 |
aaattccttcattgtcttcctgaaattcacaaagatataaatatatgagtttaagtatatgattttatatgtgtgactttagaaataattataatagtaa |
8926696 |
T |
|
| Q |
618 |
nnnnnnnnacgctgatggtgtatatgaattaaatactaaatatatattttaacaaaacattaaaatatgtgacctgtaatcttcatcaagatctgggatc |
717 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926695 |
ttttttttacgctgacagtgtatatgaattaaatactaaatatatattttaacaaaacattaaaatatgtgacctgtaatcttcatcaagatctgggatc |
8926596 |
T |
|
| Q |
718 |
tctgaaatattagaagaaggaagatggcgcaaaaagaaagtgctttcccaatccaaatcatttatttctgactgaacacactccaaacctttgct |
812 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8926595 |
tctgaaatattagaagaaggaagatggcgcaaaaagaaagtgctttcccaatccaaatcatttatttctgactgaacacactccaaacctttgct |
8926501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 2e-51; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 200 - 411
Target Start/End: Complemental strand, 55528202 - 55527991
Alignment:
| Q |
200 |
tacctcaagttggtcaccaaggttgatgacaatagagtgaggcattggagggacatcaatccattggtcatctttgagaagctgaagtccactgactttg |
299 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| || || ||||||| |||||||||||||||||| ||||||| || ||||||||||| | || ||| |
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| T |
55528202 |
tacctcaatttggtcaccaaggttgataacaatggaatggcgcattggtgggacatcaatccattggccatctttaaggagctgaagtccgccaaccttg |
55528103 |
T |
|
| Q |
300 |
tcatcttggaagagaaggatgatgccaccagcatctgtgtgcgctctaagtcccttgatgagatcaggcttaggacaaggagggtagttactaacttttg |
399 |
Q |
| |
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|||||||||||||| | || ||||||||||||||||| || ||||| ||||| ||||| ||||| ||||||||||||||||||||||| |||||||| | |
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| T |
55528102 |
tcatcttggaagagtaaaattatgccaccagcatctgtatgggctctgagtcctttgataagatctggcttaggacaaggagggtagttgctaactttgg |
55528003 |
T |
|
| Q |
400 |
taccaaaatttg |
411 |
Q |
| |
|
| |||||||||| |
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|
| T |
55528002 |
ttccaaaatttg |
55527991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 402 - 544
Target Start/End: Complemental strand, 55523724 - 55523582
Alignment:
| Q |
402 |
ccaaaatttggaccctttgatccataaaacactttcttcaagtaccctttctcaagttcaagattctcacacaataagtcaagaagttcctctgccagtt |
501 |
Q |
| |
|
||||||||||| ||||| ||||||| ||| ||||||||||| || |||||||| || ||||||||||||||| |||||||||||| ||| ||||| | |
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| T |
55523724 |
ccaaaatttggtcccttggatccatgaaagactttcttcaaataacctttctctagcccaagattctcacacagaaagtcaagaagtagctcagccaggt |
55523625 |
T |
|
| Q |
502 |
tctccaatttctctgcaaattccttcattgtcttcctgaaatt |
544 |
Q |
| |
|
|||| | || | ||||||||||||||||| ||||||| ||||| |
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|
| T |
55523624 |
tctcaagttccactgcaaattccttcattatcttcctaaaatt |
55523582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 687 - 812
Target Start/End: Complemental strand, 55523373 - 55523248
Alignment:
| Q |
687 |
tgacctgtaatcttcatcaagatctgggatctctgaaatattagaagaaggaagatggcgcaaaaagaaagtgctttcccaatccaaatcatttatttct |
786 |
Q |
| |
|
||||||||| || | ||||||||| ||||||||||| || ||| | |||||| |||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
55523373 |
tgacctgtagtcatgatcaagatcagggatctctgatatgttaaagttaggaaggtggcgcaaaaagaaagtgctttcccaatccaagtcattaatttca |
55523274 |
T |
|
| Q |
787 |
gactgaacacactccaaacctttgct |
812 |
Q |
| |
|
|||||| || |||| ||||||||||| |
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|
| T |
55523273 |
gactgagcaaactctaaacctttgct |
55523248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 4e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 199 - 531
Target Start/End: Complemental strand, 37629658 - 37629326
Alignment:
| Q |
199 |
ttacctcaagttggtcaccaaggttgatgacaatagagtgaggcattggagggacatcaatccattggtcatctttgagaagctgaagtccactgacttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||| |||| ||||||||||| | ||| | ||||||||||||||||||| |||||||| || |
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|
| T |
37629658 |
ttacctcaagttggtcaccaaggttgatgacaatggaatgatgcatgggagggacatctacccagttaccatctttgagaagctgaaggccactgacctt |
37629559 |
T |
|
| Q |
299 |
gtcatcttggaagagaaggatgatgccaccagcatctgtgtgcgctctaagtcccttgatgagatcaggcttaggacaaggagggtagttactaactttt |
398 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||| ||||| || | || ||||| | || || || || || || ||||||||||| ||| || |
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|
| T |
37629558 |
gtcatcttggaaaagaaggatgattccaccggcatcggtgtgtgcacggagaccctttacaaggtctggttttgggcatggagggtagtttgcaaccttg |
37629459 |
T |
|
| Q |
399 |
gtaccaaaatttggaccctttgatccataaaacactttcttcaagtaccctttctcaagttcaagattctcacacaataagtcaagaagttcctctgcca |
498 |
Q |
| |
|
|| |||||| |||| |||||||||||||| || | || || | |||||| || || ||| ||||||| ||||| |||||||| || || |||||||| | |
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|
| T |
37629458 |
gttccaaaagttggtccctttgatccatacaaagccttttttaggtaccccttttctagtccaagattttcacataataagtctagtagctcctctgcaa |
37629359 |
T |
|
| Q |
499 |
gtttctccaatttctctgcaaattccttcattg |
531 |
Q |
| |
|
|| |||| | ||| |||||||||||||||| |
|
|
| T |
37629358 |
gtgtctctagcttcaaagcaaattccttcattg |
37629326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 199 - 505
Target Start/End: Original strand, 36871889 - 36872195
Alignment:
| Q |
199 |
ttacctcaagttggtcaccaaggttgatgacaatagagtgaggcattggagggacatcaatccattggtcatctttgagaagctgaagtccactgacttt |
298 |
Q |
| |
|
||||||||||||||||||||||||||| || || ||||| ||||||| || ||||||| ||| ||| |||||||||| | || || |||||||| || |
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|
| T |
36871889 |
ttacctcaagttggtcaccaaggttgacaacgatggagtggcgcattgggggaacatcaacccactggccatctttgagcaattgtaggccactgacctt |
36871988 |
T |
|
| Q |
299 |
gtcatcttggaagagaaggatgatgccaccagcatctgtgtgcgctctaagtcccttgatgagatcaggcttaggacaaggagggtagttactaactttt |
398 |
Q |
| |
|
||||| ||||||||||||||||| || || ||||| ||||| || | ||| ||||| | || || || || || || |||||||||| ||||| |
|
|
| T |
36871989 |
atcatcctggaagagaaggatgattcctccggcatcggtgtgagcacgaagacccttcaccagctctggatttgggcattgagggtagttggctactttg |
36872088 |
T |
|
| Q |
399 |
gtaccaaaatttggaccctttgatccataaaacactttcttcaagtaccctttctcaagttcaagattctcacacaataagtcaagaagttcctctgcca |
498 |
Q |
| |
|
|| |||||| |||| || ||||||||||||| | || || | ||| |||||||| ||| ||||||||||||| || || || | ||| || ||||| | |
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| T |
36872089 |
gtgccaaaagttggtcctcttgatccataaaatgcctttttaaggtaacctttctctagtccaagattctcacataacaaatccaaaagctcttctgcta |
36872188 |
T |
|
| Q |
499 |
gtttctc |
505 |
Q |
| |
|
||||||| |
|
|
| T |
36872189 |
gtttctc |
36872195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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