View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3953_low_10 (Length: 222)
Name: NF3953_low_10
Description: NF3953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3953_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 31632748 - 31632575
Alignment:
| Q |
14 |
aggaggtatagtgtctgtcaggttttgggtgttatggtatatctaagcttttgaaaagtatatttataagttgcagtgttaaggtacaaaacatcccatt |
113 |
Q |
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| T |
31632748 |
aggaggtatagtgtctgtcaggttttgggtgttatggtatatccaagcttttgaaaagtatatttataagttgcagtgttaaggtacaaaacatcccatt |
31632649 |
T |
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| Q |
114 |
tgcctactcaaagagactgcctctttcaaatatccctctgttgaaaaaggagacaaactaaaagcctcttctat |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31632648 |
tgcctactcaaagagactgcctctttcaaatatccctctgttgaaaaaggagacaaactaaaagcctcttctat |
31632575 |
T |
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