View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3953_low_12 (Length: 203)
Name: NF3953_low_12
Description: NF3953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3953_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 1e-70; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 11861632 - 11861778
Alignment:
| Q |
30 |
ttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaa |
129 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11861632 |
ttaacttttttaccagaaagtataggtaacctcacttcacttgaaaaactggttctttctgaatgcagaaagttagattctctgcccaaaggaatggaaa |
11861731 |
T |
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| Q |
130 |
agcttgagtctctaaatactttgattattatggattgccctttgtta |
176 |
Q |
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| T |
11861732 |
agcttgagtctctaaatactttgattattatggattgccctttgtta |
11861778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 11829533 - 11829679
Alignment:
| Q |
30 |
ttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaa |
129 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||| |||||| |||||||||||||||| |
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| T |
11829533 |
ttaacttctttaccagaaagtataggtaacctcacttcacttgaaagactggttctttctgaatgcagaaatttagattctcttcccaaaggaatggaaa |
11829632 |
T |
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| Q |
130 |
agcttgagtctctaaatactttgattattatggattgccctttgtta |
176 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11829633 |
tgcttcagtctctaaatactttgattattatggattgccctttgtta |
11829679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 12040461 - 12040573
Alignment:
| Q |
64 |
cttcacttgaaaaactggttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatgga |
163 |
Q |
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| T |
12040461 |
cttcacttgaaaaactggttctttcggaatgcagaaagttagattctctgcccaaaggaatggaaacgctacagtctctaaagactttgattattaggga |
12040560 |
T |
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| Q |
164 |
ttgccctttgtta |
176 |
Q |
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||||| |||||| |
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| T |
12040561 |
ctgcccgttgtta |
12040573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 43 - 176
Target Start/End: Complemental strand, 11900873 - 11900740
Alignment:
| Q |
43 |
cagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtctct |
142 |
Q |
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||||||| ||||||||||| ||||| |||| ||||| ||| |||||||||||||||| |||| || ||||||||| || ||||||| ||| ||||||| |
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| T |
11900873 |
cagaaagcataggtaacctcacttcccttggcaaactagttatttctgaatgcagaaatttagattatctgcccaaggggatggaaatgctacagtctct |
11900774 |
T |
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| Q |
143 |
aaatactttgattattatggattgccctttgtta |
176 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
11900773 |
aaatactttgattattatggattgccctttgtta |
11900740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 11733368 - 11733468
Alignment:
| Q |
76 |
aactggttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgtt |
175 |
Q |
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|||||||||||||||||||||||| | | ||||||||||||||||||| |||||| ||| ||| ||| ||||| |||||||| ||||| ||||| |
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| T |
11733368 |
aactggttctttctgaatgcagaagtatggattctctgcccaaaggaatgataaagctcacgtcactatttaccttgatcattatggactgccccttgtt |
11733467 |
T |
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| Q |
176 |
a |
176 |
Q |
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| T |
11733468 |
a |
11733468 |
T |
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