View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3953_low_2 (Length: 505)
Name: NF3953_low_2
Description: NF3953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3953_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Complemental strand, 14974126 - 14973653
Alignment:
| Q |
18 |
cacactgtagcgcattctccaataggctctctacaaaggaccctacaatggaaaaatccttagccaaaagcctcaaaactacatgtccaaatgcaagatc |
117 |
Q |
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| T |
14974126 |
cacactgtagcacattctccaagaggctctcttcaaaggaccctacaatggaaaaatccttagccaaaagcctcaaaactagatgtccaaatgcaagctc |
14974027 |
T |
|
| Q |
118 |
aaaaaatacagcaaacttggatttgagaacaccaacattgtttgataacaaatactaccttgaattaatgaatagtcgtggtttgttcacttctgaccaa |
217 |
Q |
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| T |
14974026 |
agacaatacagcaaacttggatttgagaacaccaacattttttgataacaaatactaccttgaattaatgaatagtcgtggtttgttcacttctgaccaa |
14973927 |
T |
|
| Q |
218 |
gacttgttcaatgataagagaacaaagggattagtcacttcatttgccaataatcagaagctgttttttgagaagttttccgttgctattactaagatga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14973926 |
gacttgttcaatgataagagaacaaagggattagtcacttcatttgccaataatcagaagctgttttttgagaagttttccgttgctattactaagatga |
14973827 |
T |
|
| Q |
318 |
gtcaattgagtgtgttgacgggtaatcaaggtgaaattcgtgctaagtgcaatgtttcaaacacgaagtaagccatctagataaagcttatttgtgtacc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
14973826 |
gtcaattgagtgtgttgacgggtaatcaaggtgaaattcgcgctaagtgcaatgttgtaaacacaaagtaagccatcttgataaagcttatttgtgtacc |
14973727 |
T |
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| Q |
418 |
gtcaataagagctagctcaattttcgatgttgatattgtttgattgaacatcttcattccagttcgaacctatg |
491 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14973726 |
gtcaataagagctagctcaattttcgatgttgatattgtttgattgaacatcttcattccagttcaaacctatg |
14973653 |
T |
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