View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3953_low_3 (Length: 297)
Name: NF3953_low_3
Description: NF3953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3953_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 26153327 - 26153596
Alignment:
| Q |
18 |
ctagtaactacttcttttgactctggatctattaaattttacatgcttgaacatgtatgttctctannnnnnnnctttcagccttttaaactaattagga |
117 |
Q |
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| T |
26153327 |
ctagtaactacttcttttgactctggatctagtaaattttacatgcttgaacatgtatgttttctattttttttctttcagccttttaa-ctaattagga |
26153425 |
T |
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| Q |
118 |
atgcatctaagtttcagtttgtaattagcctttgaacatgagaaggttgtgtttatttgaccaatctagatatctagagggacattgatgaatgatggtc |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26153426 |
atgcatctaaatttcagtttgtaattagcctttgaacatgagaaggttgtgtttatttgaccaatctagatatctagagggacattgatgaatgatggtc |
26153525 |
T |
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| Q |
218 |
agacacatttgtatcacattcatcatgttgcttgcatgttatagtagaagactacaattttacagtataat |
288 |
Q |
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| T |
26153526 |
aaacacatctgtatcacattcatcatgttgcttgcatgttatagtagaagactacaattttacagtataat |
26153596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 26166625 - 26166894
Alignment:
| Q |
18 |
ctagtaactacttcttttgactctggatctattaaattttacatgcttgaacatgtatgttctctannnnnnnnctttcagccttttaaactaattagga |
117 |
Q |
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| T |
26166625 |
ctagtaactacttcttttgactctggatctagtaaattttacatgcttgaacatgtatgttttctattttttttctttcagccttttaa-ctaattagga |
26166723 |
T |
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| Q |
118 |
atgcatctaagtttcagtttgtaattagcctttgaacatgagaaggttgtgtttatttgaccaatctagatatctagagggacattgatgaatgatggtc |
217 |
Q |
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| T |
26166724 |
atgcatctaaatttcagtttgtaattagcctttgaacatgagaaggttgtgtttatttgaccaatctagatatctagagggacattgatgaatgatggtc |
26166823 |
T |
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| Q |
218 |
agacacatttgtatcacattcatcatgttgcttgcatgttatagtagaagactacaattttacagtataat |
288 |
Q |
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| T |
26166824 |
aaacacatctgtatcacattcatcatgttgcttgcatgttatagtagaagactacaattttacagtataat |
26166894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 163 - 288
Target Start/End: Original strand, 26158433 - 26158557
Alignment:
| Q |
163 |
gttgtgtttatttgaccaatctagatatctagagggacattgatgaatgatggtcagacacatttgtatcacattcatcatgttgcttgcatgttatagt |
262 |
Q |
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| T |
26158433 |
gttgtgtttatttgaccaatctggatatctagaaggacattgatgaatgatggtcaaacacatttgcatgacattcatcatgttgcttgtat-ttatagt |
26158531 |
T |
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| Q |
263 |
agaagactacaattttacagtataat |
288 |
Q |
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| T |
26158532 |
agaagactacaattttacagtgtaat |
26158557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 163 - 288
Target Start/End: Original strand, 26171731 - 26171855
Alignment:
| Q |
163 |
gttgtgtttatttgaccaatctagatatctagagggacattgatgaatgatggtcagacacatttgtatcacattcatcatgttgcttgcatgttatagt |
262 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||| || ||||||||||||||||||| || ||||||| |
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| T |
26171731 |
gttgtgtttatttgaccaatctggatatctagaaggacattgatgaatgatggtcaaacacatttgcatgacattcatcatgttgcttgtat-ttatagt |
26171829 |
T |
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| Q |
263 |
agaagactacaattttacagtataat |
288 |
Q |
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||||||||||||||||||||| |||| |
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| T |
26171830 |
agaagactacaattttacagtgtaat |
26171855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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