View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3953_low_4 (Length: 257)
Name: NF3953_low_4
Description: NF3953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3953_low_4 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 29041072 - 29041303
Alignment:
| Q |
19 |
cccattcggtgcaactttggtgaatctttggaacaattagatttgctacctcacgttcaaatcaaattctttcgacctgattgtttctaccagatttatg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29041072 |
cccattcggtgcaactttggtgaatctttggaacaattagatttgctacctcacgttcaaatcaaattctttcgacctgattgtttctaccggatttatg |
29041171 |
T |
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| Q |
119 |
ttatgcctttcgactggcaggcagagttctccttgccggcagctataccatccaaagctgcgctatctcccatggctctgacttcagcagcggcggtttc |
218 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |
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| T |
29041172 |
ttatgcctttcgactggcaggtagtgttctccttgccggcagctataccatccaaagttgcaccatctcccatggctctgacttcagcagcggcggtttc |
29041271 |
T |
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| Q |
219 |
agcacctcaaccacaaccgcgttcctttgcta |
250 |
Q |
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||||||||||||||||| |||||||||||||| |
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| T |
29041272 |
agcacctcaaccacaactgcgttcctttgcta |
29041303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 248
Target Start/End: Complemental strand, 28976011 - 28975883
Alignment:
| Q |
120 |
tatgcctttcgactggcaggcagagttctccttgccggcagctataccatccaaagctgcgctatctcccatggctctgacttcagcagcggcggtttca |
219 |
Q |
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|||||| ||||||| |||||||||||| | |||||||||||| | | ||||||||||| | |||||||||||| ||| | || || |||||||| || |
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| T |
28976011 |
tatgccgttcgactagcaggcagagttgttattgccggcagctgcatcctccaaagctgcaccatctcccatggcactgccgtccacaacggcggttcca |
28975912 |
T |
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| Q |
220 |
gcacctcaaccacaaccgcgttcctttgc |
248 |
Q |
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| T |
28975911 |
gcaccacaaccaccaccgcggtcctttgc |
28975883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 37 - 249
Target Start/End: Original strand, 20950279 - 20950491
Alignment:
| Q |
37 |
ggtgaatctttggaacaattagatttgctacctcacgttcaaatcaaattctttcgacctgattgtttctaccagatttatgttatgcctttcgactggc |
136 |
Q |
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|||| |||||||||||||||||||||| |||||||| ||||||||||| || |||||||||||||||| |||| ||||| || |||||||||||| |||| |
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| T |
20950279 |
ggtgcatctttggaacaattagatttgttacctcactttcaaatcaaactcattcgacctgattgtttataccggatttctgctatgcctttcgaatggc |
20950378 |
T |
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| Q |
137 |
aggcagagttctccttgccggcagctataccatccaaagctgcgctatctcccatggctctgacttcagcagcggcggtttcagcacctcaaccacaacc |
236 |
Q |
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| T |
20950379 |
aggcagagctctccttgccagcagctacaccatccaaagctgcgcaatctcccatggctttgactccagcagcggcggtttcagcacctcaaccacagcc |
20950478 |
T |
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| Q |
237 |
gcgttcctttgct |
249 |
Q |
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||||||||||||| |
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| T |
20950479 |
gcgttcctttgct |
20950491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 120 - 249
Target Start/End: Complemental strand, 38501882 - 38501753
Alignment:
| Q |
120 |
tatgcctttcgactggcaggcagagttctccttgccggcagctataccatccaaagctgcgctatctcccatggctctgacttcagcagcggcggtttca |
219 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
38501882 |
tatgcctttcgactggcaggcagagctctctttgccggcagctacaccatccaaagcagcgccatctcccatggctctgacttcagcagcggcgatttca |
38501783 |
T |
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| Q |
220 |
gcacctcaaccacaaccgcgttcctttgct |
249 |
Q |
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|||||||||||||| ||||||||||||||| |
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| T |
38501782 |
gcacctcaaccacagccgcgttcctttgct |
38501753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 248
Target Start/End: Original strand, 9282713 - 9282825
Alignment:
| Q |
136 |
caggcagagttctccttgccggcagctataccatccaaagctgcgctatctcccatggctctgacttcagcagcggcggtttcagcacctcaaccacaac |
235 |
Q |
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||||||||||| | |||||| |||||| ||| ||||||| || || |||||||||||| ||| |||| |||| ||||| ||||||| ||||||| || |
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| T |
9282713 |
caggcagagttgttattgccgacagctacaccctccaaagttgtgccatctcccatggcactgtcttccacagctgcggtcccagcaccacaaccaccac |
9282812 |
T |
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| Q |
236 |
cgcgttcctttgc |
248 |
Q |
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|||| |||||||| |
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| T |
9282813 |
cgcggtcctttgc |
9282825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 111 - 249
Target Start/End: Complemental strand, 5415 - 5280
Alignment:
| Q |
111 |
gatttatgttatgcctttcgactggcaggcagagttctccttgccggcagctataccatccaaagctgcgctatctcccatggctctgacttcagcagcg |
210 |
Q |
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||||| || |||||||||||||||||| |||||| |||| ||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| | |
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| T |
5415 |
gatttctgctatgcctttcgactggcaagcagagctctctttgccggcagctacaccatccaaagttgcgccatctcccatggctctgacttcagcagtg |
5316 |
T |
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| Q |
211 |
gcggtttcagcacctcaaccacaaccgcgttcctttgct |
249 |
Q |
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| |||| |||||||||||||| |||||||||||||| |
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| T |
5315 |
gtggtt---gcacctcaaccacagtcgcgttcctttgct |
5280 |
T |
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