View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3953_low_7 (Length: 237)
Name: NF3953_low_7
Description: NF3953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3953_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 79 - 224
Target Start/End: Complemental strand, 10037369 - 10037223
Alignment:
| Q |
79 |
tcgagtactcgttttaaaaaagagaaaagtacactctcttcatttaagaaaaacttgaattacactttgtttcgttttgtgttaaaatatat-atacact |
177 |
Q |
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| T |
10037369 |
tcgagtactcgttttaaaaaagagaaaagtacactctcttcatttaagaaaaacttgaattacattttcttccgttttgtgttaaaatatataatacact |
10037270 |
T |
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| Q |
178 |
cgtttgaaaagtaaaacttatactcccctttcctatgagatatttga |
224 |
Q |
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| T |
10037269 |
cgtttgaaaagtaaaacttatactccccttttctatgagatatttga |
10037223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 10037530 - 10037451
Alignment:
| Q |
1 |
gactgaagacgaaccaatctaactcgataaacatgannnnnnnnnagaaccgatgaatagcaaatttttctacaaatttc |
80 |
Q |
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| T |
10037530 |
gactgaagacgaaccaatctaactcgataaacatgatttttctttagaaccgatgaatagcaaatttttctacaaatttc |
10037451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 33978612 - 33978678
Alignment:
| Q |
158 |
tgttaaaatatatatacactcgtttgaaaagtaaaacttatactcccctttcctatgagatatttga |
224 |
Q |
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| T |
33978612 |
tgttaaaatatatatcccctcctttgaaaagtaaaatttatactctcctcccctataagatgtttga |
33978678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 10402585 - 10402549
Alignment:
| Q |
182 |
tgaaaagtaaaacttatactcccctttcctatgagat |
218 |
Q |
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| T |
10402585 |
tgaaaagtaaaacttatactcccctctcctataagat |
10402549 |
T |
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