View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3954_high_1 (Length: 249)
Name: NF3954_high_1
Description: NF3954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3954_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 7553674 - 7553430
Alignment:
| Q |
1 |
cagccctcatatgataatactcaagaaattagcacctcatttttatagctgacaggcttttgaaataaaaggagtccacatgactacatgctttcaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7553674 |
cagccctcatatgataatactcaagaaattagcacctcatttttatagctaacaggcttttgaaataaaaggagtccacatgactacatgctttcaaaat |
7553575 |
T |
|
| Q |
101 |
ctctaactacagttctgccagtttcttctgtgcatcttttgcaacattttaaaggccaaaaatattccaccatattggcatacatgctacattaacttgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7553574 |
ctctaactacagttctgccagtttcttctgtgcatcttttgcaacattttaaaggccaaaattattccaccatattggcatacatgctacattaacttgt |
7553475 |
T |
|
| Q |
201 |
ataaaaactactaatatactttaaaattcttttacctttgctact |
245 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
7553474 |
ataaaaactactaatatactttaaaactcttttacctttgttact |
7553430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University