View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3954_high_21 (Length: 306)
Name: NF3954_high_21
Description: NF3954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3954_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 50159190 - 50159467
Alignment:
| Q |
1 |
tattttccttaataattcttcaaaatcattcccttgttttaattaattaaaattgcttgttttctgttacagtgcgaagtcatggctgcctccatcaaac |
100 |
Q |
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| T |
50159190 |
tattttccttaataattcttcaaaatcattcccttgttttaattaattaaaattgcttgttttctgttacagtgcgaagtcatggctgcctccatcaaac |
50159289 |
T |
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| Q |
101 |
acatggctctcgctgtttcgttacttggtttcgtctctttcatactcggtgttattgccgaaaacaaaaaggtagtattactctttcttaccttttcatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
50159290 |
acatggctctcgctgtttcgttacttggtttcgtctctttcatactcggtgttattgccgaaaacaaaaaggtagcattactctttcttactttttcatc |
50159389 |
T |
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| Q |
201 |
aaaaatcaattatttatctttgtgtaaagaatgtcgcgtcaatatcatctaatcaacttttgactttaatttatctat |
278 |
Q |
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| T |
50159390 |
aaaaatcaattatttatctttgtgtaaagtatgtcgcgtcaatattatctaatcaacttttgactttaatttatctat |
50159467 |
T |
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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 22988642 - 22988555
Alignment:
| Q |
82 |
atggctgcctccatcaaacacatggctctcgctgtttcgttacttgg-----tttcgtctctttcatactcggtgttattgccgaaaa |
164 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| |||||||| |
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| T |
22988642 |
atggctgccttcgtcaaacacatggctctcgctgtttcgttacttggtgtcatctcttctctttcatactcggtgttatagccgaaaa |
22988555 |
T |
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