View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3954_high_4 (Length: 404)
Name: NF3954_high_4
Description: NF3954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3954_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 383
Target Start/End: Complemental strand, 23004877 - 23004500
Alignment:
| Q |
11 |
tggacatcatcaccttctgaggacctccataacttaaatgatttatccacctcctgttaaatgctaaaaagttcaggaaaaaagtataggctgatgctga |
110 |
Q |
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| T |
23004877 |
tggacagcttcaccttctgaggacctccataacttaaatgatttatccacctcctgttaaatgctaaaaatttcaggaaaaaagtataggctgatgctga |
23004778 |
T |
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| Q |
111 |
aataattatggcacattggtatgtcgataatactttgtcaactgtataccggtatcgagatgcaggagacttgaacttcagtaaaactagnnnnnnnn-- |
208 |
Q |
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| T |
23004777 |
aataattatggcacactggtatgtcgataatactttgtcaagtgtataccggtatcgagatgcaggagacttgaacttcagtaaaattagaaagaaagaa |
23004678 |
T |
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| Q |
209 |
---tcgctatttcaccatactgtgtcaaagatgatgcataacacataatgtgcacacaactactaatgtttatactcactttctgacacagactacgagc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
23004677 |
aaatcgctatttcaccatactgtgtcaaagatgatgcataacacataatgtgcacacaaatactattgtttatactcactttctgacacagactacgagc |
23004578 |
T |
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| Q |
306 |
atccaactaacatgattgatttattaaaaaatacacgtctagccatcaaacaagaattcttaagctatctgatgatgt |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23004577 |
atccaactaacatgattgatttattaaaaaatacacgtctagccatcaaacaagaattcttaagctatctgatgatgt |
23004500 |
T |
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