View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3954_high_5 (Length: 384)
Name: NF3954_high_5
Description: NF3954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3954_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 28 - 355
Target Start/End: Complemental strand, 21835069 - 21834742
Alignment:
| Q |
28 |
caagcaaagtaaatcaaactcaagctaataattccaacaacaacaaacaaatgaaacagtaataacaaatcgaaccagaattgctagtgaagacagataa |
127 |
Q |
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| T |
21835069 |
caagcaaagtaaatcaaactcaagctaataattccaacaacaacaaacaaatgaaacagtaataacaaatcgaaccagaattgctagtgaagacagatga |
21834970 |
T |
|
| Q |
128 |
gattcataaactacaaaagatggtgtctagcaatcgttcactgagagggtttgaagggcatggtcttgcacagctgaatgatgtttaaggttaatttgaa |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21834969 |
gattcataaactacaaaagatggtgtctagcaatcgttcactgagagggtttgaagggcatggtcttgcacagctgaatgatgtttaaggttaatttgaa |
21834870 |
T |
|
| Q |
228 |
gggcgttgaattcgtgtagtagcgtttgaatttaaaatgatggatgaagtaatgtttgagagtacaacaaaggtggaagcggcgttttgagtacaaaaac |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21834869 |
gggcgttgaattcgtgtagtagcgtttgaatttaaaatgatggatgaagtaatgtttgagagtacagcaaaggtggaagcggcgttttgagtacaaaaat |
21834770 |
T |
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| Q |
328 |
ggtggaggtggtatttgagagtacaacg |
355 |
Q |
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|||||||||| |||||| |||||||||| |
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| T |
21834769 |
ggtggaggtgctatttgggagtacaacg |
21834742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 149
Target Start/End: Complemental strand, 6595228 - 6595135
Alignment:
| Q |
56 |
taattccaacaacaacaaacaaatgaaacagtaataacaaatcgaaccagaattgctagtgaagacagataagattcataaactacaaaagatg |
149 |
Q |
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| T |
6595228 |
taattccaacaacaacaaacaaataaaaaaataatgacaaattgaaccagaattgctagtgaaaagacatgagattcatactctacaaaagatg |
6595135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 6597371 - 6597294
Alignment:
| Q |
66 |
aacaacaaacaaatgaaacagtaataacaaatcgaaccagaattgctagtgaagacagataagattcataaactacaa |
143 |
Q |
| |
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||||| |||||||||||||||| || |||||| |||||||| ||| ||||||| | | || ||| ||||| ||||||| |
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| T |
6597371 |
aacaaaaaacaaatgaaacagtgatgacaaattgaaccagagttggtagtgaaaagacatgagaatcatacactacaa |
6597294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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