View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3955_low_3 (Length: 329)

Name: NF3955_low_3
Description: NF3955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3955_low_3
NF3955_low_3
[»] chr6 (3 HSPs)
chr6 (19-323)||(4994328-4994632)
chr6 (90-308)||(4981698-4981916)
chr6 (88-308)||(4977587-4977808)


Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 4994632 - 4994328
Alignment:
Q  19 taaatggtttggaaaattggatgtcaatgatgcaatctaaaacatctagaacggatgagacttataagattttttctattaccgggtcacctaggtttga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4994632 taaatggtttggaaaattggatgtcaatgatgcaatctaaaacatctagaacggatgagacttataagattttttctattaccgggtcacctaggtttga 4994533  T
Q  119 ggtgtatagttttgattttgggtggggtaaacctaagaaagttgatgttacttcggttgatagaccaggagctttttatctttcgggaaatagtaataat 218  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4994532 ggtgtatagttttgattttgggtggggtaagcctaagaaagttgatgttacttcggttgatagaccaggagctttttatctttcgggaaataggaataat 4994433  T
Q  219 gatggtggaattgaaattggtttgactttgaacaagcaacaaatggaggtttttgctcgactttttgttcaaggacttaaatccttgtaaatttgaagga 318  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4994432 gatggtggaattgagattggtttgactttgaacaagcaacaaatggaagattttgctcgactttttgttcaaggacttgaatccttgtaaatttgaagga 4994333  T
Q  319 tttac 323  Q
    |||||    
T  4994332 tttac 4994328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 90 - 308
Target Start/End: Complemental strand, 4981916 - 4981698
Alignment:
Q  90 ttttctattaccgggtcacctaggtttgaggtgtatagttttgattttgggtggggtaaacctaagaaagttgatgttacttcggttgatagaccaggag 189  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||| | ||||||    
T  4981916 ttttctattgccgggtcacctaggtttgatgtttatagttttgattttggatggggtaaacctaagaaagttgatgttacttctattgataaaacaggag 4981817  T
Q  190 ctttttatctttcgggaaatagtaataatgatggtggaattgaaattggtttgactttgaacaagcaacaaatggaggtttttgctcgactttttgttca 289  Q
    |||||| ||||||||  ||||| |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||    
T  4981816 ctttttctctttcggagaataggaataatgatggtggaattgagattggtttggctttgaacaaacaacaaatggaggtttttgctcaactttttgttca 4981717  T
Q  290 aggacttaaatccttgtaa 308  Q
    ||||||| |||| ||||||    
T  4981716 aggacttgaatcattgtaa 4981698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 88 - 308
Target Start/End: Complemental strand, 4977808 - 4977587
Alignment:
Q  88 ttttttctattaccgggtcacctaggtttgaggtgtatagttttgattttgggtggggtaaacctaagaaagttgatgttacttcggttgatagaccagg 187  Q
    ||||||||||| | || |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||| | ||||    
T  4977808 ttttttctattgcaggatcacctagatttgaggtttatagttttgattttggatggggtaaacctaagaaagttgatgttacttctattgataaaacagg 4977709  T
Q  188 agctttttatctttcgggaaatagtaataatgatggtgga-attgaaattggtttgactttgaacaagcaacaaatggaggtttttgctcgactttttgt 286  Q
    |||||||| ||||||||  ||||| |||||||||||||||  |||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  4977708 agctttttctctttcggagaatagaaataatgatggtggagtttgagattggtttgactttgaacaagcaacagatggaggtttttgctcaactttttgt 4977609  T
Q  287 tcaaggacttaaatccttgtaa 308  Q
    |||||||||| |||||||||||    
T  4977608 tcaaggacttgaatccttgtaa 4977587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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