View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3955_low_4 (Length: 320)
Name: NF3955_low_4
Description: NF3955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3955_low_4 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 7 - 320
Target Start/End: Complemental strand, 4995048 - 4994735
Alignment:
| Q |
7 |
gaattttggtggagaaacaaataatcgtagcttaaaggtttggcaaacaataagtgcaacaaaaggtgaagcaatcaaaggtttgtttgaattatcactt |
106 |
Q |
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| T |
4995048 |
gaattttggtggagaaacaaataatcgtagcttaaaggtttggcaaacaataagtgcaacaaaaggtgaagcaatcaaaggtttgtttgaattatcactt |
4994949 |
T |
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| Q |
107 |
ttggatattcaaaagcttaagaaatatgcacaatccaaggttgaaaataaaaaggtttcaacttttgcggttacatgtgcttatttgttgtcattagggg |
206 |
Q |
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| T |
4994948 |
ttggatattcaaaagcttaagaaatatgcacaatctaaggttgaaaataaaaaggtttcaacttttgcggttacatgtgcttatttgttgtcattagggg |
4994849 |
T |
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| Q |
207 |
ttaaagttgaccaacaaaaacccaataaggcatttttggtgtttgctgttgattgtaggtcacgcttggatccaccaattaatgaaaattattttgggaa |
306 |
Q |
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| T |
4994848 |
ttaaagttgaccaacaaaaacccaataaggcatttttggtttttgctgttgattgtaggtcacgcttggatccaccaattaatgaaaattattttgggaa |
4994749 |
T |
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| Q |
307 |
ttgtattgtgtcaa |
320 |
Q |
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| T |
4994748 |
ttgtattgtgtcaa |
4994735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 7 - 319
Target Start/End: Complemental strand, 4978289 - 4977977
Alignment:
| Q |
7 |
gaattttggtggagaaacaaataatcgtagcttaaaggtttggcaaacaataagtgcaacaaaaggtgaagcaatcaaaggtttgtttgaattatcactt |
106 |
Q |
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| T |
4978289 |
gaattttggtggagaaacaaataatcgaagcttgaaggtttgggaaataattagtgcaacaaaaggtgaaacaatcaaaggtttgtttgaattttcactt |
4978190 |
T |
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| Q |
107 |
ttggatattcaaaagcttaagaaatatgcacaatccaaggttgaaaataaaaaggtttcaacttttgcggttacatgtgcttatttgttgtcattagggg |
206 |
Q |
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| T |
4978189 |
ttagatattcaaaagcttaagaaatatgcacaatccaaagttgaaaataaaaaggtttcaacttttgcggttacttgtgcttatttgttggcattagcgg |
4978090 |
T |
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| Q |
207 |
ttaaagttgaccaacaaaaacccaataaggcatttttggtgtttgctgttgattgtaggtcacgcttggatccaccaattaatgaaaattattttgggaa |
306 |
Q |
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| T |
4978089 |
ttaaagttgacaaaccaaaatctaataagacagcttttgtttttactatcgatagtaggtcacgtttggatccaccaattaatggaaattattttgggaa |
4977990 |
T |
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| Q |
307 |
ttgtattgtgtca |
319 |
Q |
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| T |
4977989 |
ttgtcttgtgtca |
4977977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 7 - 320
Target Start/End: Complemental strand, 4982406 - 4982081
Alignment:
| Q |
7 |
gaattttggtggagaaacaaataatcgtagcttaaaggtttggcaaacaataagtgcaacaaaaggtgaagcaatcaaaggtttgtttgaattatcactt |
106 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||| ||||||| | | ||| ||| |||||||||| ||||||| | ||| |||| |||| | |
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| T |
4982406 |
gaattttggtggagaaacaaataatcgaagcttgaaggtttgggaaacaattaatacaataaagggtgaagcaaccaaaggtatttttcaattgtcacct |
4982307 |
T |
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| Q |
107 |
ttggatattcaaaagcttaagaaatatgcacaatccaaggttg---aaaataaaaagg---------tttcaacttttgcggttacatgtgcttatttgt |
194 |
Q |
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| T |
4982306 |
ttggatattcaaaagcttaagaaacatgcacaatccaagattgaaaaaaataacaaggttattaagctttcaactttttcagttacttgtgcttatttgt |
4982207 |
T |
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| Q |
195 |
tgtcattaggggttaaagttgaccaacaaaaacccaataaggcatttttggtgtttgctgttgattgtaggtcacgcttggatccaccaattaatgaaaa |
294 |
Q |
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| T |
4982206 |
tggcatgtacgataaaagttgaccaaccaaaatccaacaaggtaccttttatttttagtgtggattgtaggccacgtttggatccaccaattaatgcaaa |
4982107 |
T |
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| Q |
295 |
ttattttgggaattgtattgtgtcaa |
320 |
Q |
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| T |
4982106 |
ttattttggaaattgtgttgtgtcaa |
4982081 |
T |
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