View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3955_low_5 (Length: 267)
Name: NF3955_low_5
Description: NF3955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3955_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 362840 - 362636
Alignment:
| Q |
12 |
agaagcaaaggcagtgatggaatatatgacatgaaatcatgtactcttactagcctctggaagaagaaccaattttctagatattatatggttcaacttt |
111 |
Q |
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| T |
362840 |
agaaccaaacgcagtgatggaatatatgacatgaaatcatgtactcttactagcctctagaagaagaaccaattttctagatattatatggttcaacttt |
362741 |
T |
|
| Q |
112 |
ttccataaactcaccatgtagttttggagtgtacttaattttcattttcaatcactaataattttgttcactaatagttttggatgagtttgtgtatgtt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
362740 |
ttccataaactcaccatgtagttttggagtgtacttaattttcattttcaatcactaataattttgttcactaatagttttggatgagtttgtgtatgtt |
362641 |
T |
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| Q |
212 |
ataat |
216 |
Q |
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||||| |
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| T |
362640 |
ataat |
362636 |
T |
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