View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3956_high_2 (Length: 489)
Name: NF3956_high_2
Description: NF3956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3956_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 122 - 436
Target Start/End: Complemental strand, 42002958 - 42002644
Alignment:
| Q |
122 |
tgattcaggttttaatgtttttctcccttttagttttaatggcactctttgtcttgactatggcaatatgaaagttgtattgtggaacccaactaccaag |
221 |
Q |
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| T |
42002958 |
tgattcaggttttaatgtttttctcccttttagttttaatggcactctttgtcttgactatggcaatatgaaagttgtattgtggaacccaactaccaag |
42002859 |
T |
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| Q |
222 |
aaatttaagatcattcctccgtctagggatattgatcctaattggtatgtttgggctaataatcatcaagttggttatgaccatgttaaaagatgactat |
321 |
Q |
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| T |
42002858 |
aaatttaagatcattcctccgtctagggatattgatcctaattggtatgtttgggctaataatcatcaagttggttatgaccatgttaaaaaatgactat |
42002759 |
T |
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| Q |
322 |
aagatgcttaggtggactcatcgttctccaaaaattgacgaggatgtgccattgccgccagatgtttctttctgagagatatatagcctaagcaataact |
421 |
Q |
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| T |
42002758 |
aagatgcttaggtggattcatcgttctccaaaaattgacgaggatgtgccattgccgccagatgtttctttctgagagatatatagcctaagcaataact |
42002659 |
T |
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| Q |
422 |
cttggagaaaaattg |
436 |
Q |
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| T |
42002658 |
cttggagaaaaattg |
42002644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 42003718 - 42003613
Alignment:
| Q |
19 |
gaggtgggggacgatccctggaagaatgacttgtaacagccatgatatgttttggaaagagcttttgactacagaagaatgcaaacatgcatggagatat |
118 |
Q |
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| T |
42003718 |
gaggtgggggacgatccctggaagaatgacttgtaacagccatgatatgttttggaaagagcttttgactacagaagaatgcaaacatgcatggagatat |
42003619 |
T |
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| Q |
119 |
tagtga |
124 |
Q |
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|||||| |
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| T |
42003618 |
tagtga |
42003613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 429 - 481
Target Start/End: Complemental strand, 41996591 - 41996539
Alignment:
| Q |
429 |
aaaaattgatgatgatggtaagcattatggtgcttataatatatatgatgatg |
481 |
Q |
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| T |
41996591 |
aaaaattgatgatgatggtaagcattatggtgcttataatatatatgatgatg |
41996539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 42406202 - 42406259
Alignment:
| Q |
184 |
gcaatatgaaagttgtattgtggaacccaactaccaagaaatttaagatcattcctcc |
241 |
Q |
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| T |
42406202 |
gcaatatgaaacttatattgtggaacccaactaccaatgaattcaaggtcattcctcc |
42406259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 27230634 - 27230590
Alignment:
| Q |
391 |
ttctgagagatatatagcctaagcaataactcttggagaaaaatt |
435 |
Q |
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||||| ||||||||||||||||| | ||||||||||||||||||| |
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| T |
27230634 |
ttctgggagatatatagcctaagaagtaactcttggagaaaaatt |
27230590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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