View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3956_low_3 (Length: 355)

Name: NF3956_low_3
Description: NF3956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3956_low_3
NF3956_low_3
[»] chr4 (8 HSPs)
chr4 (132-339)||(39318343-39318550)
chr4 (12-139)||(31271589-31271712)
chr4 (12-139)||(37261719-37261842)
chr4 (61-139)||(33466260-33466338)
chr4 (52-132)||(19104851-19104931)
chr4 (85-139)||(12317508-12317562)
chr4 (79-139)||(41814843-41814903)
chr4 (12-44)||(39318567-39318599)
[»] scaffold0060 (1 HSPs)
scaffold0060 (12-139)||(49879-50002)
[»] scaffold0070 (2 HSPs)
scaffold0070 (12-139)||(61406-61529)
scaffold0070 (12-139)||(65608-65731)
[»] chr2 (11 HSPs)
chr2 (12-139)||(9182575-9182698)
chr2 (52-139)||(24535126-24535213)
chr2 (12-139)||(30649008-30649131)
chr2 (52-131)||(24534864-24534943)
chr2 (52-131)||(24534995-24535074)
chr2 (12-139)||(17972530-17972653)
chr2 (12-139)||(30653707-30653830)
chr2 (12-139)||(25480694-25480818)
chr2 (12-139)||(25488300-25488424)
chr2 (57-139)||(28450068-28450150)
chr2 (61-129)||(30615774-30615842)
[»] chr8 (6 HSPs)
chr8 (12-139)||(17023050-17023173)
chr8 (12-139)||(4240185-4240308)
chr8 (12-139)||(17553543-17553666)
chr8 (13-139)||(8320490-8320612)
chr8 (62-139)||(23083777-23083854)
chr8 (91-131)||(27919373-27919413)
[»] chr5 (7 HSPs)
chr5 (12-139)||(26670094-26670217)
chr5 (12-139)||(26941691-26941814)
chr5 (13-139)||(41999523-41999645)
chr5 (12-139)||(559585-559708)
chr5 (12-139)||(39521244-39521369)
chr5 (12-139)||(36939369-36939492)
chr5 (61-129)||(36426471-36426539)
[»] chr3 (7 HSPs)
chr3 (12-139)||(23663273-23663396)
chr3 (12-139)||(18470032-18470155)
chr3 (13-139)||(8886039-8886161)
chr3 (12-137)||(24756312-24756433)
chr3 (12-137)||(24765309-24765430)
chr3 (61-139)||(12968992-12969070)
chr3 (12-95)||(3686248-3686327)
[»] chr1 (5 HSPs)
chr1 (61-139)||(47454088-47454166)
chr1 (12-139)||(10138118-10138241)
chr1 (61-139)||(16038447-16038525)
chr1 (65-139)||(25846617-25846691)
chr1 (61-139)||(11811747-11811825)
[»] scaffold0108 (1 HSPs)
scaffold0108 (81-139)||(22616-22674)
[»] chr7 (1 HSPs)
chr7 (61-139)||(10390273-10390351)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 9e-95; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 132 - 339
Target Start/End: Complemental strand, 39318550 - 39318343
Alignment:
Q  132 ctaaatggggcaattattaggtatctcagaggggcaattatggtgggaatcctctgtaagggaaacactagctcggagttataaggatggtatgattatg 231  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  39318550 ctaaatggggcaattattaggtatctcaaaggggcatttatggtgggaatcctatgtaagagaaacactagctcggagttataaggatggtatgattatg 39318451  T
Q  232 attatgcaggcaatgtggatgatataaaagcacatcaatatatgtgttcgtgctgggttcagggttagtgtcatgatcatataataaacaacctactgac 331  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  39318450 attatgcaggcgatgtggatgatataaaagcacatcaatatatgtgttcgtgctgggttcagggttagtgtcatgatcatataataaaaaacctattgac 39318351  T
Q  332 actatatc 339  Q
    ||| ||||    
T  39318350 actctatc 39318343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 31271712 - 31271589
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    |||||||||||||||||||||||||||| |||     || |||| | | ||||||||||||||||||||||||||||||||||| |||||||||| ||      
T  31271712 caaaggttttagacagagaaaaatatagtcttc----ttcgacacttattcaccagtcactagaatcatatccataagagtactagtccctttagccgcc 31271617  T
Q  112 gttcataactcgatagtactctaaatgg 139  Q
    ||||||||||||||||||||| ||||||    
T  31271616 gttcataactcgatagtactccaaatgg 31271589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 37261719 - 37261842
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    ||||||||||||| |||||||||||||| |||     || |||| | | |||||||||||||||||||||| |||||||||||| |||||||||| ||      
T  37261719 caaaggttttagatagagaaaaatatagtcttc----ttcgacacttattcaccagtcactagaatcatattcataagagtactagtccctttagccgcc 37261814  T
Q  112 gttcataactcgatagtactctaaatgg 139  Q
    ||||||||||||||||||||| ||||||    
T  37261815 gttcataactcgatagtactccaaatgg 37261842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 33466260 - 33466338
Alignment:
Q  61 tcaccagtcactagaatcatatccataagagtacttgtccctttagtcgttgttcataactcgatagtactctaaatgg 139  Q
    |||||| |||||||||||||||||||||||||||| |||||||||| ||  ||||||||||||||||||||| ||||||    
T  33466260 tcaccaatcactagaatcatatccataagagtactagtccctttagccgccgttcataactcgatagtactccaaatgg 33466338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 19104931 - 19104851
Alignment:
Q  52 gacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgttgttcataactcgatagtactc 132  Q
    |||| ||| ||||||||||||||||||||| ||||||||||||| |||||||||| ||  |||||||||||||||||||||    
T  19104931 gacactcattcaccagtcactagaatcataaccataagagtactagtccctttagccgccgttcataactcgatagtactc 19104851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 12317562 - 12317508
Alignment:
Q  85 ataagagtacttgtccctttagtcgttgttcataactcgatagtactctaaatgg 139  Q
    ||||||||||| |||||||||| || |||||||||||||||||||||| ||||||    
T  12317562 ataagagtactagtccctttagccgctgttcataactcgatagtactccaaatgg 12317508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 41814903 - 41814843
Alignment:
Q  79 atatccataagagtacttgtccctttagtcgttgttcataactcgatagtactctaaatgg 139  Q
    |||| |||||||||||| |||||||||| ||  ||||||||||||||||||||| ||||||    
T  41814903 atattcataagagtactagtccctttagccgccgttcataactcgatagtactccaaatgg 41814843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 39318599 - 39318567
Alignment:
Q  12 caaaggttttagacagagaaaaatatagactta 44  Q
    |||||||| ||||||||||||||||||||||||    
T  39318599 caaaggttatagacagagaaaaatatagactta 39318567  T

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Target: scaffold0060 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 49879 - 50002
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    ||||||||||||||||||||||||||||||||     || |||||||| |||||||||||||||||||||| |||||||||||| |||||||||| ||      
T  49879 caaaggttttagacagagaaaaatatagacttt----ttcgacattcattcaccagtcactagaatcatattcataagagtactagtccctttagccgca 49974  T
Q  112 gttcataactcgatagtactctaaatgg 139  Q
    ||||||||||||||||||||| ||||||    
T  49975 gttcataactcgatagtactccaaatgg 50002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 61529 - 61406
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    ||||||||||||||||||||||||||||||||     || |||||||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||      
T  61529 caaaggttttagacagagaaaaatatagacttc----ttcgacattcattcatcagtcactagaattatatccataagagtactagtccctttagtcgca 61434  T
Q  112 gttcataactcgatagtactctaaatgg 139  Q
    |||||||||| |||||||||| ||||||    
T  61433 gttcataacttgatagtactccaaatgg 61406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 65731 - 65608
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    ||||||||||||||||||||||||||||||||     || |||||||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||      
T  65731 caaaggttttagacagagaaaaatatagacttc----ttcgacattcattcatcagtcactagaattatatccataagagtactagtccctttagtcgca 65636  T
Q  112 gttcataactcgatagtactctaaatgg 139  Q
    |||||||||| |||||||||| ||||||    
T  65635 gttcataacttgatagtactccaaatgg 65608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 9182575 - 9182698
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    |||||||||||||||||||||||||||| |||     ||||||| | | ||||||||| ||||||||||||||||||||||||| |||||||||| |||     
T  9182575 caaaggttttagacagagaaaaatatagtcttc----tttgacacttattcaccagtctctagaatcatatccataagagtactagtccctttagccgtc 9182670  T
Q  112 gttcataactcgatagtactctaaatgg 139  Q
    ||||||||||||||||||||| ||||||    
T  9182671 gttcataactcgatagtactccaaatgg 9182698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 24535126 - 24535213
Alignment:
Q  52 gacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgttgttcataactcgatagtactctaaatgg 139  Q
    |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||    
T  24535126 gacactcattcaccagtcactagaatcatatccataagagtactagtccctttagccgttgttcataactcgatagtactccaaatgg 24535213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 30649131 - 30649008
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    |||||||||||||||||||||||||||| |||     || |||| | | ||||||||||||||||||||||||||||||||||| |||||||||| ||      
T  30649131 caaaggttttagacagagaaaaatatagtcttc----ttcgacacttattcaccagtcactagaatcatatccataagagtactagtccctttagccgcc 30649036  T
Q  112 gttcataactcgatagtactctaaatgg 139  Q
    ||||||||||||||||||||| ||||||    
T  30649035 gttcataactcgatagtactccaaatgg 30649008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 24534864 - 24534943
Alignment:
Q  52 gacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgttgttcataactcgatagtact 131  Q
    |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  24534864 gacactcattcaccagtcactagaatcatatccataagagtactagtccctttagccgttgttcataactcgatagtact 24534943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 24534995 - 24535074
Alignment:
Q  52 gacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgttgttcataactcgatagtact 131  Q
    |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  24534995 gacactcattcaccagtcactagaatcatatccataagagtactagtccctttagccgttgttcataactcgatagtact 24535074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 17972530 - 17972653
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    |||||||||||||||||||||||||||| |||     || |||| | | ||||||||||||||||||||||||||||||||||| |||||||||| ||      
T  17972530 caaaggttttagacagagaaaaatatagtcttc----ttcgacacttattcaccagtcactagaatcatatccataagagtactagtccctttagccgcc 17972625  T
Q  112 gttcataactcgatagtactctaaatgg 139  Q
    ||||||||||||||| ||||| ||||||    
T  17972626 gttcataactcgataatactccaaatgg 17972653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 30653830 - 30653707
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    |||||||||||||||||||||||||||| |||     || |||| | | |||||||||||||||||||||| ||||||||||| ||||||||||| ||      
T  30653830 caaaggttttagacagagaaaaatatagtcttc----ttcgacacttattcaccagtcactagaatcatattcataagagtacctgtccctttagccgcc 30653735  T
Q  112 gttcataactcgatagtactctaaatgg 139  Q
    ||||||||||||||||||||| ||||||    
T  30653734 gttcataactcgatagtactccaaatgg 30653707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 25480694 - 25480818
Alignment:
Q  12 caaaggttttagacagagaaaaa-tatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgt 110  Q
    ||||||||||||||||||||||| |||||||||     || |  | ||| ||||||||||||||||||||||||||||||||| | |||||||||| ||     
T  25480694 caaaggttttagacagagaaaaaatatagacttc----ttcgctactcattcaccagtcactagaatcatatccataagagtattagtccctttagccgc 25480789  T
Q  111 tgttcataactcgatagtactctaaatgg 139  Q
     ||||||||||||||||||||| ||||||    
T  25480790 cgttcataactcgatagtactccaaatgg 25480818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 25488300 - 25488424
Alignment:
Q  12 caaaggttttagacagagaaaaa-tatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgt 110  Q
    ||||||||||||||||||||||| |||||||||     || |  | ||| ||||||||||||||||||||||||||||||||| | |||||||||| ||     
T  25488300 caaaggttttagacagagaaaaaatatagacttc----ttcgctactcattcaccagtcactagaatcatatccataagagtattagtccctttagccgc 25488395  T
Q  111 tgttcataactcgatagtactctaaatgg 139  Q
     ||||||||||||||||||||| ||||||    
T  25488396 cgttcataactcgatagtactccaaatgg 25488424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 28450150 - 28450068
Alignment:
Q  57 tcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgttgttcataactcgatagtactctaaatgg 139  Q
    |||||||||||||  || ||||||||||||||| ||||| ||||||||||||||||||||||||| ||  |||||| ||||||    
T  28450150 tcactcaccagtcgttataatcatatccataagggtactagtccctttagtcgttgttcataacttgacggtactccaaatgg 28450068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 30615842 - 30615774
Alignment:
Q  61 tcaccagtcactagaatcatatccataagagtacttgtccctttagtcgttgttcataactcgatagta 129  Q
    ||||| ||||||||||| || |||||||| ||||| |||||||||| | |||||||||| | |||||||    
T  30615842 tcacctgtcactagaataatctccataagggtactagtccctttagccattgttcataaattgatagta 30615774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 17023173 - 17023050
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    |||||||||||||||||||||||||||| |||     || |||| | | ||||||||||||||||||||||||||||||||||| |||||||||  || |    
T  17023173 caaaggttttagacagagaaaaatatagtcttc----ttcgacacttattcaccagtcactagaatcatatccataagagtactagtccctttaaccgct 17023078  T
Q  112 gttcataactcgatagtactctaaatgg 139  Q
    ||||||||||||||||||||| ||||||    
T  17023077 gttcataactcgatagtactccaaatgg 17023050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 4240185 - 4240308
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    |||||||||||||||||||||||||||| |||     || |||| | | ||||||||||||||||||||||||||||||||||| |||||||||| ||      
T  4240185 caaaggttttagacagagaaaaatatagtcttc----ttcgacacttattcaccagtcactagaatcatatccataagagtactagtccctttagccgcc 4240280  T
Q  112 gttcataactcgatagtactctaaatgg 139  Q
    ||||||||||||||| ||||| ||||||    
T  4240281 gttcataactcgataatactccaaatgg 4240308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 17553666 - 17553543
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    |||||||||||||||||||||||||||| |||  | |    ||| | | ||||||||||||||||||||||||||||||||||| |||||||||| ||      
T  17553666 caaaggttttagacagagaaaaatatagtcttcttca----acacttattcaccagtcactagaatcatatccataagagtactagtccctttagccgcc 17553571  T
Q  112 gttcataactcgatagtactctaaatgg 139  Q
    ||||||||||||||||||||| ||||||    
T  17553570 gttcataactcgatagtactccaaatgg 17553543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 8320490 - 8320612
Alignment:
Q  13 aaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgttg 112  Q
    |||||||||||||| ||||||||||||||||     || |||||||| |||| ||||||||||| |||||||||||||||||| |||||||||| ||       
T  8320490 aaaggttttagacatagaaaaatatagacttc----ttcgacattcattcacgagtcactagaaccatatccataagagtactagtccctttagccgcaa 8320585  T
Q  113 ttcataactcgatagtactctaaatgg 139  Q
    |||||||||||||||||||| ||||||    
T  8320586 ttcataactcgatagtactccaaatgg 8320612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 23083777 - 23083854
Alignment:
Q  62 caccagtcactagaatcatatccataagagtacttgtccctttagtcgttgttcataactcgatagtactctaaatgg 139  Q
    ||||||||||||||||||||||||||||||| || |||||||||| ||  |||||||||| |||||||||| ||||||    
T  23083777 caccagtcactagaatcatatccataagagtgctagtccctttagccgccgttcataacttgatagtactccaaatgg 23083854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 27919413 - 27919373
Alignment:
Q  91 gtacttgtccctttagtcgttgttcataactcgatagtact 131  Q
    ||||| |||||||||| ||||||||||||||||||| ||||    
T  27919413 gtactagtccctttagccgttgttcataactcgataatact 27919373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 26670217 - 26670094
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    ||||| |||||||||||||||||||||| |||     || |||| | | ||||||||||||||||||||||||||||||||||| |||||||||| || |    
T  26670217 caaagattttagacagagaaaaatatagtcttc----ttcgacacttattcaccagtcactagaatcatatccataagagtactagtccctttagccgct 26670122  T
Q  112 gttcataactcgatagtactctaaatgg 139  Q
    ||||||||||||||||||||| ||||||    
T  26670121 gttcataactcgatagtactccaaatgg 26670094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 26941814 - 26941691
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    ||||| |||||||||||||||||||||| |||     || |||| | | ||||||||||||||||||||||||||||||||||| |||||||||| || |    
T  26941814 caaagattttagacagagaaaaatatagtcttc----ttcgacacttattcaccagtcactagaatcatatccataagagtactagtccctttagccgct 26941719  T
Q  112 gttcataactcgatagtactctaaatgg 139  Q
    ||||||||||||||||||||| ||||||    
T  26941718 gttcataactcgatagtactccaaatgg 26941691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 41999645 - 41999523
Alignment:
Q  13 aaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgttg 112  Q
    |||||||||||| |||||||||||||| |||     || |||| | | ||||||||||||||||||||||||||||||||||| |||||||||| || ||    
T  41999645 aaaggttttagaaagagaaaaatatagtcttc----ttcgacacttattcaccagtcactagaatcatatccataagagtactagtccctttagccgctg 41999550  T
Q  113 ttcataactcgatagtactctaaatgg 139  Q
    |||||||||||||||||||| ||||||    
T  41999549 ttcataactcgatagtactccaaatgg 41999523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 559708 - 559585
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    |||||||||||||||||||||||||||| |||     || |||| | | ||||||||||||||||||||||||||||||||||| |||||||||| ||      
T  559708 caaaggttttagacagagaaaaatatagtcttc----ttcgacacttattcaccagtcactagaatcatatccataagagtactagtccctttagccgcc 559613  T
Q  112 gttcataactcgatagtactctaaatgg 139  Q
    ||||||||||||||| ||||| ||||||    
T  559612 gttcataactcgataatactccaaatgg 559585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 39521369 - 39521244
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    ||||||||||||| ||||||||| ||| | |   || || |||||| | ||||||||||||||||||||||||||||||||||| |||||||||| ||      
T  39521369 caaaggttttagatagagaaaaaaatatagtc--ttcttcgacatttattcaccagtcactagaatcatatccataagagtactagtccctttagccgcc 39521272  T
Q  112 gttcataactcgatagtactctaaatgg 139  Q
    ||||||||||||||||||||| ||||||    
T  39521271 gttcataactcgatagtactccaaatgg 39521244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 36939369 - 36939492
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    |||||||||||||||||||||||||||| |||     || |||| | | ||||||||||||||||||||||||||||||||||| |||||||||| ||      
T  36939369 caaaggttttagacagagaaaaatatagtcttc----ttcgacacttattcaccagtcactagaatcatatccataagagtactagtccctttagccgcc 36939464  T
Q  112 gttcataactcgatagtactctaaatgg 139  Q
     |||||||||||||| ||||| ||||||    
T  36939465 attcataactcgataatactccaaatgg 36939492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 36426539 - 36426471
Alignment:
Q  61 tcaccagtcactagaatcatatccataagagtacttgtccctttagtcgttgttcataactcgatagta 129  Q
    |||||||||||||| |||||||||||||||||||| |||||||| | ||  ||||||||||||||||||    
T  36426539 tcaccagtcactagtatcatatccataagagtactagtcccttttgccgccgttcataactcgatagta 36426471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 23663273 - 23663396
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    |||||||||||||||||||||||||||| |||     || |||| | | ||||||||||||||||||||||||||||||||||| |||||||||| ||      
T  23663273 caaaggttttagacagagaaaaatatagtcttc----ttcgacacttattcaccagtcactagaatcatatccataagagtactagtccctttagccgcc 23663368  T
Q  112 gttcataactcgatagtactctaaatgg 139  Q
    ||||||||||||||||||||| ||||||    
T  23663369 gttcataactcgatagtactccaaatgg 23663396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 18470155 - 18470032
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    |||||||||||||||||||||||||||| |||     || |||| | | ||||||||||||||||||||||||||||||||||| |||||||||| ||      
T  18470155 caaaggttttagacagagaaaaatatagtcttc----ttcgacacttattcaccagtcactagaatcatatccataagagtactagtccctttagccgcc 18470060  T
Q  112 gttcataactcgatagtactctaaatgg 139  Q
     |||||||||||||||||||| ||||||    
T  18470059 tttcataactcgatagtactccaaatgg 18470032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 8886161 - 8886039
Alignment:
Q  13 aaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgttg 112  Q
    ||||||||||||||||||||||||||| |||     || |||| | | |||||||||||| |||||||||||||||||||||| |||||||||| ||  |    
T  8886161 aaaggttttagacagagaaaaatatagtcttc----ttcgacacttattcaccagtcacttgaatcatatccataagagtactagtccctttagccgccg 8886066  T
Q  113 ttcataactcgatagtactctaaatgg 139  Q
    |||||||||||||||||||| ||||||    
T  8886065 ttcataactcgatagtactccaaatgg 8886039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 24756312 - 24756433
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    |||||||| |||| ||||||||||||||||||     || |||||||| ||||||||||||||||||||||||||||||||| | |||||||||| ||      
T  24756312 caaaggttgtagatagagaaaaatatagacttc----ttcgacattcattcaccagtcactagaatcatatccataagagtaatagtccctttagccgca 24756407  T
Q  112 gttcataactcgatagtactctaaat 137  Q
     |||||||||||||||||||| ||||    
T  24756408 attcataactcgatagtactccaaat 24756433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 24765309 - 24765430
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    |||||||| |||| ||||||||||||||||||     || |||||||| ||||||||||||||||||||||||||||||||| | |||||||||| ||      
T  24765309 caaaggttgtagatagagaaaaatatagacttc----ttcgacattcattcaccagtcactagaatcatatccataagagtaatagtccctttagccgca 24765404  T
Q  112 gttcataactcgatagtactctaaat 137  Q
     |||||||||||||||||||| ||||    
T  24765405 attcataactcgatagtactccaaat 24765430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 12968992 - 12969070
Alignment:
Q  61 tcaccagtcactagaatcatatccataagagtacttgtccctttagtcgttgttcataactcgatagtactctaaatgg 139  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||| |  |||||||||||||||||||||| ||||||    
T  12968992 tcaccagtcaatagaatcatattcataagagtactagtccctttagccaatgttcataactcgatagtactccaaatgg 12969070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 3686327 - 3686248
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtact 95  Q
    |||||||||||||||||||||||||||| |||     || |||| | | |||||||||||||||||||||||||||||||||||    
T  3686327 caaaggttttagacagagaaaaatatagtcttc----ttcgacacttattcaccagtcactagaatcatatccataagagtact 3686248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 47454088 - 47454166
Alignment:
Q  61 tcaccagtcactagaatcatatccataagagtacttgtccctttagtcgttgttcataactcgatagtactctaaatgg 139  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  47454088 tcactagtcactagaatcatatccataagagtactagtccctttagtcgttgttcataactcgatagtactccaaatgg 47454166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 10138241 - 10138118
Alignment:
Q  12 caaaggttttagacagagaaaaatatagacttaattatttgacattcactcaccagtcactagaatcatatccataagagtacttgtccctttagtcgtt 111  Q
    |||||||||||||||||||||||||||| |||     || |||| | | ||||||||||||||||||||||||||||||||||| |||||||||| ||      
T  10138241 caaaggttttagacagagaaaaatatagtcttc----ttcgacacttattcaccagtcactagaatcatatccataagagtactagtccctttagccgcc 10138146  T
Q  112 gttcataactcgatagtactctaaatgg 139  Q
    ||||||||||||||| ||||| ||||||    
T  10138145 gttcataactcgataatactccaaatgg 10138118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 16038525 - 16038447
Alignment:
Q  61 tcaccagtcactagaatcatatccataagagtacttgtccctttagtcgttgttcataactcgatagtactctaaatgg 139  Q
    |||||||||| |||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||| ||||||    
T  16038525 tcaccagtcattagaatcatatccataagagtactagtgcctttagccgttgttcataactcgatagtactccaaatgg 16038447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 25846691 - 25846617
Alignment:
Q  65 cagtcactagaatcatatccataagagtacttgtccctttagtcgttgttcataactcgatagtactctaaatgg 139  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||  ||||||||||||||||||||| ||||||    
T  25846691 cagtcactagaatcatatccataagagtactagtccctttagccgccgttcataactcgatagtactccaaatgg 25846617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 11811825 - 11811747
Alignment:
Q  61 tcaccagtcactagaatcatatccataagagtacttgtccctttagtcgttgttcataactcgatagtactctaaatgg 139  Q
    |||| |||||||| |||||||| ||| || ||||| |||||||||||||||||| |||||| |||| ||||||||||||    
T  11811825 tcactagtcactataatcatattcatgagggtactagtccctttagtcgttgtttataacttgataatactctaaatgg 11811747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 22674 - 22616
Alignment:
Q  81 atccataagagtacttgtccctttagtcgttgttcataactcgatagtactctaaatgg 139  Q
    ||||||||||||||| |||||||||| |  |||||||||||||||||||||| ||||||    
T  22674 atccataagagtactagtccctttagccactgttcataactcgatagtactccaaatgg 22616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 10390273 - 10390351
Alignment:
Q  61 tcaccagtcactagaatcatatccataagagtacttgtccctttagtcgttgttcataactcgatagtactctaaatgg 139  Q
    |||||||||||||||||||||  ||| || ||||| ||||||| || ||||||||||| ||||| ||||||| ||||||    
T  10390273 tcaccagtcactagaatcatactcatgagggtactagtcccttaagccgttgttcatatctcgacagtactccaaatgg 10390351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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