View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3956_low_4 (Length: 315)
Name: NF3956_low_4
Description: NF3956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3956_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 11768407 - 11768219
Alignment:
| Q |
8 |
gacatcatcaccaacggagagggcaaccaaaaaagaagtcgcgcaagaagggatgaaaccaaatggaaattgaacaaaagagataatagaggaggaaata |
107 |
Q |
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| T |
11768407 |
gacatcatagccaacggagagggcaaccaaaaaagaagtcgcgccagaagggatgaaaccaaatggaaattgaacaaaagagataatagagggagaaata |
11768308 |
T |
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| Q |
108 |
accaaaagactcaaatataccttcaatgagaattgttcacaaaaatttgggagcactatattgactcaccaaattaaccaaaagaaaca |
196 |
Q |
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| T |
11768307 |
atcaaaagactcgcatatatcttaaatgagaattgttcacaaaaaattgggagcactatattgactcaccaaattaaccaaaagaaaca |
11768219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 165 - 297
Target Start/End: Complemental strand, 11768195 - 11768077
Alignment:
| Q |
165 |
atattgactcaccaaattaaccaaaagaaacatcataacatgaggctttcacaaaccaattttgagcactattttaactcactgaagcacaaaaagaaac |
264 |
Q |
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| T |
11768195 |
atattgactcgccaaattaaccaaaagaaacatcataacatgaggttttcacaaaccaattgtgagcact--------------aagcataaaaagaaac |
11768110 |
T |
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| Q |
265 |
atcataacatggtgctactcaaataaattgtga |
297 |
Q |
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| T |
11768109 |
atcataacatggtgctacgcaaataaactgtga |
11768077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 50706450 - 50706332
Alignment:
| Q |
118 |
tcaaatataccttcaatgagaattgttcacaaa-aatttgggagcactatattgactcaccaaattaaccaaaagaaacatcataacatgaggctttcac |
216 |
Q |
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| T |
50706450 |
tcaaatatgtcttcaatgagaactcttcacaaacaaattttgagcactatcttgactcaccaaattatccaaaagaaacctcataacatga-gatttcac |
50706352 |
T |
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| Q |
217 |
aaaccaattttgagcactat |
236 |
Q |
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| T |
50706351 |
aaacaaattgtgaggactat |
50706332 |
T |
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