View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3956_low_5 (Length: 305)

Name: NF3956_low_5
Description: NF3956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3956_low_5
NF3956_low_5
[»] chr5 (1 HSPs)
chr5 (17-305)||(4757362-4757648)


Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 4757648 - 4757362
Alignment:
Q  17 atatgtcatcatcattgcgaagtattccccgactttaccgatgattaatttctgaaggaaattcgaccgattacctttaatgagatctttccttctaaca 116  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4757648 atatgtcatcatcattgtgaagtattccccgactttaccgatgattaatttctgaaggaaattcgaccgattacctttaatgatatctttccttctaaca 4757549  T
Q  117 annnnnnnnnnnnatccataaaattcaacctaagatcttatttaaaagaaaggacagaaatctgagtcaagttccattcaaccgatatacttagttgata 216  Q
    |            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4757548 aattttttttt--atccataaaattcaacctaagatcttatttaaaagaaaggacagaaatctgagtcaagttccattcaaccgatatacttagttgata 4757451  T
Q  217 aattcaatatcattattactagctacataatttatttgcggtctctatgatgcatggcatggtgtgacattgataaatacgtgtacatg 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4757450 aattcaatatcattattactagctacataatttatttgcggtctctatgatgcatggcatggtgtgacattgacaaatacgtgtacatg 4757362  T

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