View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3957_low_1 (Length: 685)

Name: NF3957_low_1
Description: NF3957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3957_low_1
NF3957_low_1
[»] chr2 (4 HSPs)
chr2 (19-448)||(16915812-16916242)
chr2 (302-369)||(4076303-4076370)
chr2 (397-440)||(4076365-4076408)
chr2 (18-97)||(36625462-36625540)
[»] chr1 (8 HSPs)
chr1 (184-448)||(18431242-18431509)
chr1 (281-439)||(22788094-22788255)
chr1 (281-362)||(1014387-1014468)
chr1 (220-284)||(1014872-1014936)
chr1 (187-222)||(1017163-1017198)
chr1 (397-439)||(1014344-1014386)
chr1 (184-222)||(11943668-11943706)
chr1 (184-222)||(22787427-22787465)
[»] chr7 (5 HSPs)
chr7 (181-448)||(46437555-46437825)
chr7 (281-369)||(39780552-39780640)
chr7 (226-284)||(39786133-39786191)
chr7 (397-439)||(39780515-39780557)
chr7 (184-222)||(38663364-38663402)
[»] scaffold0571 (1 HSPs)
scaffold0571 (188-341)||(1-154)
[»] chr6 (10 HSPs)
chr6 (187-345)||(5013734-5013891)
chr6 (281-439)||(16693217-16693380)
chr6 (281-369)||(18819423-18819511)
chr6 (281-369)||(24904329-24904417)
chr6 (220-284)||(18819094-18819158)
chr6 (220-284)||(24903862-24903926)
chr6 (393-448)||(5013901-5013956)
chr6 (184-222)||(16693607-16693645)
chr6 (184-222)||(18816829-18816867)
chr6 (397-439)||(18819506-18819548)
[»] chr4 (6 HSPs)
chr4 (281-448)||(45067438-45067608)
chr4 (284-448)||(8903475-8903642)
chr4 (220-284)||(45066030-45066094)
chr4 (220-284)||(8904153-8904217)
chr4 (181-222)||(45065881-45065922)
chr4 (185-218)||(8904430-8904463)
[»] chr5 (10 HSPs)
chr5 (281-448)||(18113464-18113634)
chr5 (283-448)||(424471-424639)
chr5 (281-369)||(25634141-25634229)
chr5 (281-366)||(17074882-17074967)
chr5 (224-283)||(17075326-17075385)
chr5 (21-115)||(11966322-11966416)
chr5 (397-440)||(25634224-25634267)
chr5 (184-218)||(423989-424023)
chr5 (184-218)||(9047491-9047525)
chr5 (403-448)||(17074840-17074885)
[»] chr8 (7 HSPs)
chr8 (281-439)||(28535411-28535572)
chr8 (281-369)||(45483709-45483797)
chr8 (220-284)||(45484062-45484126)
chr8 (281-348)||(11463630-11463697)
chr8 (381-448)||(11463695-11463765)
chr8 (397-439)||(45483672-45483714)
chr8 (184-222)||(45486353-45486391)
[»] chr3 (19 HSPs)
chr3 (281-439)||(52118543-52118704)
chr3 (281-369)||(25069586-25069674)
chr3 (281-369)||(26905661-26905749)
chr3 (281-369)||(36615291-36615379)
chr3 (281-369)||(28211380-28211468)
chr3 (220-284)||(26905332-26905396)
chr3 (220-284)||(36615644-36615708)
chr3 (281-351)||(26556962-26557032)
chr3 (354-439)||(26555724-26555812)
chr3 (397-439)||(25069549-25069591)
chr3 (281-334)||(4973320-4973374)
chr3 (184-222)||(25070869-25070907)
chr3 (184-222)||(26557644-26557682)
chr3 (184-222)||(26903067-26903105)
chr3 (397-439)||(26905744-26905786)
chr3 (184-222)||(28210883-28210921)
chr3 (397-439)||(36615254-36615296)
chr3 (184-222)||(36617935-36617973)
chr3 (184-222)||(52119126-52119164)


Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Original strand, 16915812 - 16916242
Alignment:
Q  19 ccttatgttggaaaattctcccattcctctcctttcatatgacacaaagcatagaaatccagataatatttaaggtcaagcaagagtttttggagaatca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16915812 ccttatgttggaaaattctcccattcctctcctttcatatgacacaaagcatagaaatccagataatatttaaggtcaagcaagagtttttggagaatca 16915911  T
Q  119 ccgcagcccac-aaactacataagatgatattgtaattttccataaagagccgttgatatacccaagggcggatttagacatttcatattagtgtggcaa 217  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16915912 ccgcagcccaccaaactacataagatgatattgtaattttccataaagagccgttgatatacccaagggcggatttagacatttcatattagtgtggcaa 16916011  T
Q  218 aatttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggcctaaaaccctaaaaaagcaattgtataatgaatgaga 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16916012 aatttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggcctaaaaccctaaaaaagcaattgtagaatgaatgaga 16916111  T
Q  318 aagtagagaatcaattgactatttcacttaccttaacttagacttagagtgagaactgagagatacactagatttgaaggagtgaagagataaaatgatg 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  16916112 aagtagagaatcaattgactatttcacttaccttaacttagacttagagtgagaactgagagatacactagatttgaaggagtgaagagagaaaatgttg 16916211  T
Q  418 ttgttgactgatgagagtggaaaaaggagag 448  Q
    ||| |||||||||||||||||| ||||||||    
T  16916212 ttgctgactgatgagagtggaagaaggagag 16916242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 302 - 369
Target Start/End: Original strand, 4076303 - 4076370
Alignment:
Q  302 tgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagacttagagtga 369  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  4076303 tgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttggcttagacttagagtga 4076370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 4076365 - 4076408
Alignment:
Q  397 gagtgaagagataaaatgatgttgttgactgatgagagtggaaa 440  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||    
T  4076365 gagtgaagagagaaaattatgttgttgactgatgagagtggaaa 4076408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 36625462 - 36625540
Alignment:
Q  18 accttatgttggaaaattctcccattcctctcctttcatatgacacaaagcatagaaatccagataatatttaaggtcaa 97  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||| ||||  | |||||| ||||||| ||| || |||||    
T  36625462 accttatgttg-aaaattctctcatttctctcctttcatatgactcaaataacagaaattcagataacattaaaagtcaa 36625540  T

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Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 184 - 448
Target Start/End: Original strand, 18431242 - 18431509
Alignment:
Q  184 gggcggatttagacatttcatattagtgtggcaaaatttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggccta 283  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18431242 gggcggatctagacatttcatattagtgtggcaaaatttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggccta 18431341  T
Q  284 aaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagacttagagtgagaactgagagatac 383  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18431342 aaaccctaaaaaaacaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttcacttagacttagagtgagaactgagagatac 18431441  T
Q  384 actagattt---gaaggagtgaagagataaaatgatgttgttgactgatgagagtggaaaaaggagag 448  Q
    |||||||||   ||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||    
T  18431442 actagatttgaagaaggagtgaagagagaaaatgatgttgctgactgatgagagtggaagaaggagag 18431509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 281 - 439
Target Start/End: Original strand, 22788094 - 22788255
Alignment:
Q  281 ctaaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagacttagagtgagaactgagaga 380  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||| |||||||    
T  22788094 ctaaaaccctaaaaaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttggtttagacttagagtgagaattgagaga 22788193  T
Q  381 tacactagattt---gaaggagtgaagagataaaatgatgttgttgactgatgagagtggaa 439  Q
    ||||||||| ||   ||||||||||||||| ||||||||| || ||||||||||||||||||    
T  22788194 tacactagaattgaagaaggagtgaagagagaaaatgatgctgctgactgatgagagtggaa 22788255  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 281 - 362
Target Start/End: Complemental strand, 1014468 - 1014387
Alignment:
Q  281 ctaaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagactt 362  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  1014468 ctaaaaccctaaaaaatcaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttggcttagactt 1014387  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 1014936 - 1014872
Alignment:
Q  220 tttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggcctaa 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1014936 tttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggcctaa 1014872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 1017198 - 1017163
Alignment:
Q  187 cggatttagacatttcatattagtgtggcaaaattt 222  Q
    |||||||||||||| |||||||||||||||||||||    
T  1017198 cggatttagacattgcatattagtgtggcaaaattt 1017163  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 397 - 439
Target Start/End: Complemental strand, 1014386 - 1014344
Alignment:
Q  397 gagtgaagagataaaatgatgttgttgactgatgagagtggaa 439  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||    
T  1014386 gagtgaagagagaaaattatgttgttgaccgatgagagtggaa 1014344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 11943668 - 11943706
Alignment:
Q  184 gggcggatttagacatttcatattagtgtggcaaaattt 222  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  11943668 gggcggatctagacatttgatattagtgtggcaaaattt 11943706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 22787427 - 22787465
Alignment:
Q  184 gggcggatttagacatttcatattagtgtggcaaaattt 222  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  22787427 gggcggatctagacatgtcatattagtgtggcaaaattt 22787465  T

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Target: chr7 (Bit Score: 193; Significance: 1e-104; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 181 - 448
Target Start/End: Complemental strand, 46437825 - 46437555
Alignment:
Q  181 caagggcggatttagacatttcatattagtgtggcaaaatttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggc 280  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||    
T  46437825 caagggcggatctagacattttatattagtgtggcaaaatttcaagtaagctttgcgtactgcatcttggatgtcaggatgatagcttgaaattggaggc 46437726  T
Q  281 ctaaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagacttagagtgagaactgagaga 380  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||    
T  46437725 ctaaaatcctaaaaaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcacctaccttggcttagacttagagtgagaactgagaga 46437626  T
Q  381 tacactagattt---gaaggagtgaagagataaaatgatgttgttgactgatgagagtggaaaaaggagag 448  Q
    ||||||||||||   ||||||||||||||| ||||||||| || ||| |||||||||||||| || |||||    
T  46437625 tacactagatttgaagaaggagtgaagagagaaaatgatgctgctgattgatgagagtggaagaatgagag 46437555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 281 - 369
Target Start/End: Complemental strand, 39780640 - 39780552
Alignment:
Q  281 ctaaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagacttagagtga 369  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  39780640 ctaaaaccctaaaaaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttggcttagacttagagtga 39780552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 39786133 - 39786191
Alignment:
Q  226 gtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggcctaa 284  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  39786133 gtaagctttacgtacctcatcttgaatgtcaggatgatagtttgaaattggaggcctaa 39786191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 397 - 439
Target Start/End: Complemental strand, 39780557 - 39780515
Alignment:
Q  397 gagtgaagagataaaatgatgttgttgactgatgagagtggaa 439  Q
    ||||||||||| ||||| |||||||||||||||||||||||||    
T  39780557 gagtgaagagagaaaattatgttgttgactgatgagagtggaa 39780515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 38663402 - 38663364
Alignment:
Q  184 gggcggatttagacatttcatattagtgtggcaaaattt 222  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  38663402 gggcggatctagacattgcatattagtgtggcaaaattt 38663364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 188 - 341
Target Start/End: Complemental strand, 154 - 1
Alignment:
Q  188 ggatttagacatttcatattagtgtggcaaaatttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggcctaaaac 287  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  154 ggatctagacatttcatattagtgtggcaaaatttcaagtaagctttgcgtacctcattttggatgtcaggatgatagcttgaaattggaggcctaaaat 55  T
Q  288 cctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactattt 341  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  54 cctaaaaaagcaattgtagaatgaatgagaaagtagagaatcaattgactattt 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 3e-65; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 187 - 345
Target Start/End: Original strand, 5013734 - 5013891
Alignment:
Q  187 cggatttagacatttcatattagtgtggcaaaatttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggcctaaaa 286  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| ||||||||||    
T  5013734 cggatctagacatttcatattagtgtggcaaaatttcaagtaagctttacatgcctcatcttggatg-caggatgatagcttgaaattgaaggcctaaaa 5013832  T
Q  287 ccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcact 345  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  5013833 ccctaaaaaagcaattgtagaatgaatgagaaagtaaagaatcaattgactatttcact 5013891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 281 - 439
Target Start/End: Complemental strand, 16693380 - 16693217
Alignment:
Q  281 ctaaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagact--tagagtgagaactgaga 378  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||| |||||    
T  16693380 ctaaaaccctaaaaaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttgacttagacttatagagtgagaattgaga 16693281  T
Q  379 gatacactagattt---gaaggagtgaagagataaaatgatgttgttgactgatgagagtggaa 439  Q
    ||||||||||||||   ||||||||||||||| ||||||||| || ||||||||||||||||||    
T  16693280 gatacactagatttgaagaaggagtgaagagagaaaatgatgctgctgactgatgagagtggaa 16693217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 281 - 369
Target Start/End: Original strand, 18819423 - 18819511
Alignment:
Q  281 ctaaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagacttagagtga 369  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  18819423 ctaaaaccctaaaaaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttggcttagacttagagtga 18819511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 281 - 369
Target Start/End: Original strand, 24904329 - 24904417
Alignment:
Q  281 ctaaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagacttagagtga 369  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||  ||||||||||||||||    
T  24904329 ctaaaaccctaaaaaagcaattgtagaatgaatgagaaagtagagaatcaattgaaaatttcacttaccttcgcttagacttagagtga 24904417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 18819094 - 18819158
Alignment:
Q  220 tttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggcctaa 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18819094 tttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggcctaa 18819158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 24903862 - 24903926
Alignment:
Q  220 tttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggcctaa 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24903862 tttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggcctaa 24903926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 393 - 448
Target Start/End: Original strand, 5013901 - 5013956
Alignment:
Q  393 gaaggagtgaagagataaaatgatgttgttgactgatgagagtggaaaaaggagag 448  Q
    ||||||||||||| | |||||||||||| |||||||||||||||||| ||| ||||    
T  5013901 gaaggagtgaagatagaaaatgatgttgctgactgatgagagtggaagaagaagag 5013956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 16693645 - 16693607
Alignment:
Q  184 gggcggatttagacatttcatattagtgtggcaaaattt 222  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  16693645 gggcggatctagacatttcatattagtgtggcaaaattt 16693607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 18816829 - 18816867
Alignment:
Q  184 gggcggatttagacatttcatattagtgtggcaaaattt 222  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  18816829 gggcggatctagacattgcatattagtgtggcaaaattt 18816867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 397 - 439
Target Start/End: Original strand, 18819506 - 18819548
Alignment:
Q  397 gagtgaagagataaaatgatgttgttgactgatgagagtggaa 439  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||    
T  18819506 gagtgaagagagaaaattatgttgctgactgatgagagtggaa 18819548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 5e-64; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 281 - 448
Target Start/End: Original strand, 45067438 - 45067608
Alignment:
Q  281 ctaaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagacttagagtgagaactgagaga 380  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  45067438 ctaaaaccctaaaaaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttggcttagacttagagtgagaactgagaga 45067537  T
Q  381 tacactagatttg---aaggagtgaagagataaaatgatgttgttgactgatgagagtggaaaaaggagag 448  Q
    |||||||||||||   ||||||||| |||| |||||||||||| |||||| ||||||||||| ||||||||    
T  45067538 tacactagatttgaaaaaggagtgacgagagaaaatgatgttgctgactgctgagagtggaagaaggagag 45067608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 284 - 448
Target Start/End: Complemental strand, 8903642 - 8903475
Alignment:
Q  284 aaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagacttagagtgagaactgagagatac 383  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||    
T  8903642 aaaccctaaaatagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttggcttacacttagagtgagaactgagagatac 8903543  T
Q  384 actagattt---gaaggagtgaagagataaaatgatgttgttgactgatgagagtggaaaaaggagag 448  Q
    |||||||||   ||||||||||||||| ||||||||| || |||||| ||||||||||| ||||||||    
T  8903542 actagatttgaagaaggagtgaagagagaaaatgatgctgctgactgctgagagtggaagaaggagag 8903475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 45066030 - 45066094
Alignment:
Q  220 tttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggcctaa 284  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  45066030 tttcaagtaagctttacgtacctcatcttggatttcaggaagatagcttgaaattggaggcctaa 45066094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 8904217 - 8904153
Alignment:
Q  220 tttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggcctaa 284  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||    
T  8904217 tttcaagtaagctttacgtacctcatcttagatgacaggatgatagcatgaaattggaggcctaa 8904153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 45065881 - 45065922
Alignment:
Q  181 caagggcggatttagacatttcatattagtgtggcaaaattt 222  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  45065881 caagggtggatctagacatttcatattagtgtggcaaaattt 45065922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 8904463 - 8904430
Alignment:
Q  185 ggcggatttagacatttcatattagtgtggcaaa 218  Q
    ||||||| ||||||||||||||||||||||||||    
T  8904463 ggcggatctagacatttcatattagtgtggcaaa 8904430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 1e-61; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 281 - 448
Target Start/End: Original strand, 18113464 - 18113634
Alignment:
Q  281 ctaaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagacttagagtgagaactgagaga 380  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  18113464 ctaaaaccctaaaaaagcaattgtagaatgaatgaaaaagtagagaatcaattgaatatttcacttaccttgacttagacttagagtgagaactgagaga 18113563  T
Q  381 tacactagattt---gaaggagtgaagagataaaatgatgttgttgactgatgagagtggaaaaaggagag 448  Q
    ||||||||||||   ||||||||||||||| |||||||||||| |||||| |||||| |||| ||||||||    
T  18113564 tacactagatttgaagaaggagtgaagagagaaaatgatgttgctgactgctgagaggggaagaaggagag 18113634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 283 - 448
Target Start/End: Original strand, 424471 - 424639
Alignment:
Q  283 aaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagacttagagtgagaactgagagata 382  Q
    ||||||||||||||||||| ||| |||||| ||||| |||||||||||||| | ||||||| |||| ||  |||||||||||||||||||||||||||||    
T  424471 aaaaccctaaaaaagcaatcgtagaatgaacgagaaggtagagaatcaatttaatatttcatttacattggcttagacttagagtgagaactgagagata 424570  T
Q  383 cactagattt---gaaggagtgaagagataaaatgatgttgttgactgatgagagtggaaaaaggagag 448  Q
    ||||||||||   ||||||||||||||| ||||||||| || |||||| ||||||||||| ||||||||    
T  424571 cactagatttgaagaaggagtgaagagagaaaatgatgctgctgactgctgagagtggaagaaggagag 424639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 281 - 369
Target Start/End: Original strand, 25634141 - 25634229
Alignment:
Q  281 ctaaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagacttagagtga 369  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  25634141 ctaaaaccctaaaaaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttggcttagacttagagtga 25634229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 281 - 366
Target Start/End: Complemental strand, 17074967 - 17074882
Alignment:
Q  281 ctaaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagacttagag 366  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  17074967 ctaaaaccctaaaaaagcaattgtagaatgaatgagaaagtagagaatcaattgactatctcacttaccttggcttagacttagag 17074882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 17075385 - 17075326
Alignment:
Q  224 aagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggccta 283  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  17075385 aagtaagctttacatacctcatcttggatgtcaggttgatagcttgaaattggaggccta 17075326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 11966322 - 11966416
Alignment:
Q  21 ttatgttggaaaattctcccattcctctcctttcatatgacacaaagcatagaaatccagataatatttaaggtcaagcaagagtttttggagaa 115  Q
    |||||||| ||||| |||||||| ||||| || ||||||| |||||| | ||||| |||||||||||||||  ||  || |||||||||||||||    
T  11966322 ttatgttgaaaaatcctcccatttctctctttccatatgatacaaagtacagaaagccagataatatttaaaatcgggcgagagtttttggagaa 11966416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 25634224 - 25634267
Alignment:
Q  397 gagtgaagagataaaatgatgttgttgactgatgagagtggaaa 440  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||    
T  25634224 gagtgaagagagaaaattatgttgctgactgatgagagtggaaa 25634267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 423989 - 424023
Alignment:
Q  184 gggcggatttagacatttcatattagtgtggcaaa 218  Q
    |||||||| ||||||||||||||||||||||||||    
T  423989 gggcggatctagacatttcatattagtgtggcaaa 424023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 9047491 - 9047525
Alignment:
Q  184 gggcggatttagacatttcatattagtgtggcaaa 218  Q
    |||||||| ||||||||||||||||||||||||||    
T  9047491 gggcggatctagacatttcatattagtgtggcaaa 9047525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 448
Target Start/End: Complemental strand, 17074885 - 17074840
Alignment:
Q  403 agagataaaatgatgttgttgactgatgagagtggaaaaaggagag 448  Q
    ||||| ||||||||||||||||||| || |||||||| ||||||||    
T  17074885 agagagaaaatgatgttgttgactgctgggagtggaagaaggagag 17074840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 5e-61; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 281 - 439
Target Start/End: Complemental strand, 28535572 - 28535411
Alignment:
Q  281 ctaaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagacttagagtgagaactgagaga 380  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||    
T  28535572 ctaaaaccctaaaaaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttggcttagacttagagtgagaattgagaga 28535473  T
Q  381 tacactagattt---gaaggagtgaagagataaaatgatgttgttgactgatgagagtggaa 439  Q
    ||||||||||||   ||||||||||||||| ||||||||| || ||||||||||||||||||    
T  28535472 tacactagatttgaagaaggagtgaagagagaaaatgatgctgctgactgatgagagtggaa 28535411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 281 - 369
Target Start/End: Complemental strand, 45483797 - 45483709
Alignment:
Q  281 ctaaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagacttagagtga 369  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  45483797 ctaaaaccctaaaaaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttggcttagacttagagtga 45483709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 45484126 - 45484062
Alignment:
Q  220 tttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggcctaa 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45484126 tttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggcctaa 45484062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 11463630 - 11463697
Alignment:
Q  281 ctaaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttac 348  Q
    |||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11463630 ctaaaaccctaaaatagaaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttac 11463697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 381 - 448
Target Start/End: Original strand, 11463695 - 11463765
Alignment:
Q  381 tacactagatttgaag---gagtgaagagataaaatgatgttgttgactgatgagagtggaaaaaggagag 448  Q
    ||||||||||||||||   ||||||||||| ||||||||| || |||||| ||||||||||| ||||||||    
T  11463695 tacactagatttgaagaaggagtgaagagagaaaatgatgctgctgactgctgagagtggaagaaggagag 11463765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 397 - 439
Target Start/End: Complemental strand, 45483714 - 45483672
Alignment:
Q  397 gagtgaagagataaaatgatgttgttgactgatgagagtggaa 439  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||    
T  45483714 gagtgaagagagaaaattatgttgctgactgatgagagtggaa 45483672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 45486391 - 45486353
Alignment:
Q  184 gggcggatttagacatttcatattagtgtggcaaaattt 222  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  45486391 gggcggatctagacattgcatattagtgtggcaaaattt 45486353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 2e-51; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 281 - 439
Target Start/End: Complemental strand, 52118704 - 52118543
Alignment:
Q  281 ctaaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagacttagagtgagaactgagaga 380  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||| |||||||    
T  52118704 ctaaaaccctaaaaaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttggcttaaacttagagtgagaattgagaga 52118605  T
Q  381 tacactagattt---gaaggagtgaagagataaaatgatgttgttgactgatgagagtggaa 439  Q
    ||||||||| ||   ||||||||||||||| ||||||||| || |||| || ||||||||||    
T  52118604 tacactagaattgaagaaggagtgaagagagaaaatgatgctgctgaccgacgagagtggaa 52118543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 281 - 369
Target Start/End: Complemental strand, 25069674 - 25069586
Alignment:
Q  281 ctaaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagacttagagtga 369  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  25069674 ctaaaaccctaaaaaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttggcttagacttagagtga 25069586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 281 - 369
Target Start/End: Original strand, 26905661 - 26905749
Alignment:
Q  281 ctaaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagacttagagtga 369  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  26905661 ctaaaaccctaaaaaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttggcttagacttagagtga 26905749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 281 - 369
Target Start/End: Complemental strand, 36615379 - 36615291
Alignment:
Q  281 ctaaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagacttagagtga 369  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  36615379 ctaaaaccctaaaaaagcaattgtagaatgaatgagaaagtagagaatcaattgactatttcacttaccttggcttagacttagagtga 36615291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 281 - 369
Target Start/End: Original strand, 28211380 - 28211468
Alignment:
Q  281 ctaaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttaccttaacttagacttagagtga 369  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||    
T  28211380 ctaaaaccctaaaaaagcaattgtagaatgaatgagaaagtagagaatcaattgattatttcacttaccttggcttagacttagagtga 28211468  T

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Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 26905332 - 26905396
Alignment:
Q  220 tttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggcctaa 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26905332 tttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggcctaa 26905396  T

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Target: chr3; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 36615708 - 36615644
Alignment:
Q  220 tttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggcctaa 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36615708 tttcaagtaagctttacgtacctcatcttggatgtcaggatgatagcttgaaattggaggcctaa 36615644  T

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Target: chr3; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 281 - 351
Target Start/End: Complemental strand, 26557032 - 26556962
Alignment:
Q  281 ctaaaaccctaaaaaagcaattgtataatgaatgagaaagtagagaatcaattgactatttcacttacctt 351  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  26557032 ctaaaatcctaaaaaagcaattgtagaatgaatgagaaagtagagaattaattgactatttcacttacctt 26556962  T

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Target: chr3; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 354 - 439
Target Start/End: Complemental strand, 26555812 - 26555724
Alignment:
Q  354 cttagacttagagtgagaactgagagatacactagatttgaag---gagtgaagagataaaatgatgttgttgactgatgagagtggaa 439  Q
    ||||||||||||||||||| |||||||||||||||| ||||||   ||||||||||| ||||||||| || ||||||||||||||||||    
T  26555812 cttagacttagagtgagaattgagagatacactagaattgaagaaggagtgaagagagaaaatgatgatgctgactgatgagagtggaa 26555724  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 397 - 439
Target Start/End: Complemental strand, 25069591 - 25069549
Alignment:
Q  397 gagtgaagagataaaatgatgttgttgactgatgagagtggaa 439  Q
    ||||||||||| ||||| |||||||||||||||||||||||||    
T  25069591 gagtgaagagagaaaattatgttgttgactgatgagagtggaa 25069549  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 4973374 - 4973320
Alignment:
Q  281 ctaaaaccctaaaa-aagcaattgtataatgaatgagaaagtagagaatcaattg 334  Q
    |||||||||||||| ||||||||| | ||||||||||||| |||||||| |||||    
T  4973374 ctaaaaccctaaaacaagcaattggaaaatgaatgagaaattagagaattaattg 4973320  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 25070907 - 25070869
Alignment:
Q  184 gggcggatttagacatttcatattagtgtggcaaaattt 222  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  25070907 gggcggatctagacattgcatattagtgtggcaaaattt 25070869  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 26557682 - 26557644
Alignment:
Q  184 gggcggatttagacatttcatattagtgtggcaaaattt 222  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  26557682 gggcggatctagacatgtcatattagtgtggcaaaattt 26557644  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 26903067 - 26903105
Alignment:
Q  184 gggcggatttagacatttcatattagtgtggcaaaattt 222  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  26903067 gggcggatctagacattgcatattagtgtggcaaaattt 26903105  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 397 - 439
Target Start/End: Original strand, 26905744 - 26905786
Alignment:
Q  397 gagtgaagagataaaatgatgttgttgactgatgagagtggaa 439  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||    
T  26905744 gagtgaagagagaaaattatgttgctgactgatgagagtggaa 26905786  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 28210883 - 28210921
Alignment:
Q  184 gggcggatttagacatttcatattagtgtggcaaaattt 222  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  28210883 gggcggatctagacattgcatattagtgtggcaaaattt 28210921  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 397 - 439
Target Start/End: Complemental strand, 36615296 - 36615254
Alignment:
Q  397 gagtgaagagataaaatgatgttgttgactgatgagagtggaa 439  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||    
T  36615296 gagtgaagagagaaaattatgttgctgactgatgagagtggaa 36615254  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 36617973 - 36617935
Alignment:
Q  184 gggcggatttagacatttcatattagtgtggcaaaattt 222  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  36617973 gggcggatctagacattgcatattagtgtggcaaaattt 36617935  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 52119164 - 52119126
Alignment:
Q  184 gggcggatttagacatttcatattagtgtggcaaaattt 222  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  52119164 gggcggatctagacatgtcatattagtgtggcaaaattt 52119126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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