View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3957_low_4 (Length: 312)

Name: NF3957_low_4
Description: NF3957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3957_low_4
NF3957_low_4
[»] chr2 (5 HSPs)
chr2 (1-302)||(31782142-31782442)
chr2 (54-135)||(17605698-17605779)
chr2 (54-135)||(20722028-20722108)
chr2 (1-49)||(20721987-20722034)
chr2 (1-49)||(17605773-17605820)
[»] chr3 (1 HSPs)
chr3 (1-139)||(51309165-51309303)
[»] scaffold0578 (1 HSPs)
scaffold0578 (2-101)||(9801-9893)
[»] chr1 (3 HSPs)
chr1 (2-101)||(19513045-19513137)
chr1 (1-49)||(40500235-40500282)
chr1 (54-134)||(40500276-40500356)
[»] chr6 (1 HSPs)
chr6 (18-135)||(3885208-3885325)
[»] chr4 (3 HSPs)
chr4 (54-118)||(33946916-33946980)
chr4 (54-108)||(23456110-23456164)
chr4 (2-91)||(22655872-22655960)
[»] chr7 (3 HSPs)
chr7 (1-60)||(13324243-13324302)
chr7 (5-60)||(48093816-48093871)
chr7 (20-91)||(42553448-42553519)
[»] chr5 (2 HSPs)
chr5 (1-60)||(5666116-5666175)
chr5 (18-91)||(16234087-16234160)
[»] scaffold0097 (2 HSPs)
scaffold0097 (54-135)||(25857-25937)
scaffold0097 (1-49)||(25816-25863)


Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 31782442 - 31782142
Alignment:
Q  1 gttgcttattgttaatcaccattggagtaaaattgattgagattgcttataagttgcttacatgcaatgtggcaatttgggcccactaaaaacaagttaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  31782442 gttgcttattgttaatcaccattagagtaaaattgattgagattgcttataagttgcttacatgcaatgtgacaatttgggcctactaaaaacaagttaa 31782343  T
Q  101 gcaaccaaaataaattcttccattgaacatgctcttaggatatatgttagcatgactctaattacaattgtcggtattctggtgatgataggaaatcata 200  Q
    |||||||||||||||||||||| || | |||||||||||||| |||||||||||||||||| |||| |||||| |||||| |||||||||| ||||||||    
T  31782342 gcaaccaaaataaattcttccactggagatgctcttaggatacatgttagcatgactctaactacagttgtcgatattct-gtgatgatagaaaatcata 31782244  T
Q  201 tagggtttttaatccagttttagagtcaatttaaataattatatgtgtagttgttgaaagattatttagtcggaatgtgttggttagattgtatgttttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31782243 tagggtttttaatccagttttagagtcaatttaaataattatatgtgtagttgttgaaagattatttagtcggaatgtgttggttagattgtatgttttg 31782144  T
Q  301 at 302  Q
    ||    
T  31782143 at 31782142  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 17605779 - 17605698
Alignment:
Q  54 ttgcttacatgcaatgtggcaatttgggcccactaaaaacaagttaagcaaccaaaataaattcttccattgaacatgctct 135  Q
    ||||||| ||||||||||||||||||||||||| ||||  || | ||||||||||||||| |||| |||||| | |||||||    
T  17605779 ttgcttagatgcaatgtggcaatttgggcccacaaaaagtaactcaagcaaccaaaataatttctcccattggagatgctct 17605698  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 20722028 - 20722108
Alignment:
Q  54 ttgcttacatgcaatgtggcaatttgggcccactaaaaacaagttaagcaaccaaaataaattcttccattgaacatgctct 135  Q
    ||||||| ||||||||||||||||||||||||| ||||  |||||||| ||| || |||| |||| |||||| | |||||||    
T  20722028 ttgcttagatgcaatgtggcaatttgggcccac-aaaagtaagttaagaaacaaagataagttctcccattggagatgctct 20722108  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20721987 - 20722034
Alignment:
Q  1 gttgcttattgttaatcaccattggagtaaaattgattgagattgctta 49  Q
    |||||||||||| | | ||||||||||||||||||||||||||||||||    
T  20721987 gttgcttattgt-agttaccattggagtaaaattgattgagattgctta 20722034  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17605820 - 17605773
Alignment:
Q  1 gttgcttattgttaatcaccattggagtaaaattgattgagattgctta 49  Q
    |||||||||||| | ||| ||||||||||||||||||| ||||||||||    
T  17605820 gttgcttattgt-agtcagcattggagtaaaattgattaagattgctta 17605773  T

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Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 51309165 - 51309303
Alignment:
Q  1 gttgcttattgttaatcaccattggagtaaaattgattgagattgcttataagttgcttacatgcaatgtggcaatttgggcccactaaaaacaagttaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||  |||||||||||||    
T  51309165 gttgcttattgttaatcaccattggagtaaaattgattgagattacttataagttgcttacatgcaatgtggcaatttggattcagaaaaaacaagttaa 51309264  T
Q  101 gcaaccaaaataaattcttccattgaacatgctcttagg 139  Q
    ||||||||||||| ||||  ||||| | |||||||||||    
T  51309265 gcaaccaaaataagttctctcattggagatgctcttagg 51309303  T

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Target: scaffold0578 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 9801 - 9893
Alignment:
Q  2 ttgcttattgttaatcaccattggagtaaaattgattgagattgcttataagttgcttacatgcaatgtggcaatttgggcccactaaaaacaagttaag 101  Q
    |||||||||||||||||||||||||       || ||||| ||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||    
T  9801 ttgcttattgttaatcaccattgga-------tggttgagtttgcttataagttggctacatgcaatgtggcaatttgggcccacaaaaaacaagttaag 9893  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 19513137 - 19513045
Alignment:
Q  2 ttgcttattgttaatcaccattggagtaaaattgattgagattgcttataagttgcttacatgcaatgtggcaatttgggcccactaaaaacaagttaag 101  Q
    |||||||||||||||||||||||||       || ||||| ||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||    
T  19513137 ttgcttattgttaatcaccattgga-------tggttgagtttgcttataagttggctacatgcaatgtggcaatttgggcccacaaaaaacaagttaag 19513045  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40500235 - 40500282
Alignment:
Q  1 gttgcttattgttaatcaccattggagtaaaattgattgagattgctta 49  Q
    |||||||||||| | ||| ||||||||||||||||||||||||||||||    
T  40500235 gttgcttattgt-agtcatcattggagtaaaattgattgagattgctta 40500282  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 40500276 - 40500356
Alignment:
Q  54 ttgcttacatgcaatgtggcaatttgggcccactaaaaacaagttaagcaaccaaaataaattcttccattgaacatgctc 134  Q
    ||||||| ||||||||||||||||||||||||| ||||  || |||| |||  || |||| ||||||||||| | ||||||    
T  40500276 ttgcttagatgcaatgtggcaatttgggcccacaaaaagtaacttaaacaataaagataagttcttccattggagatgctc 40500356  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 3885325 - 3885208
Alignment:
Q  18 accattggagtaaaattgattgagattgcttataagttgcttacatgcaatgtggcaatttgggcccactaaaaacaagttaagcaaccaaaataaattc 117  Q
    |||||||||||| || | |||||||||||||| |  ||||||| ||||||||||||||||||| ||||| ||||  || | |||||||||| || | |||    
T  3885325 accattggagtagaactcattgagattgcttagagattgcttaaatgcaatgtggcaatttggacccacaaaaagtaactcaagcaaccaagattagttc 3885226  T
Q  118 ttccattgaacatgctct 135  Q
    |||||||| | |||||||    
T  3885225 ttccattggagatgctct 3885208  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 33946916 - 33946980
Alignment:
Q  54 ttgcttacatgcaatgtggcaatttgggcccactaaaaacaagttaagcaaccaaaataaattct 118  Q
    ||||||||||| ||||||||||||| | ||| | ||||| |||||||||||||||||||| ||||    
T  33946916 ttgcttacatgtaatgtggcaatttagaccctcaaaaaataagttaagcaaccaaaataagttct 33946980  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 23456164 - 23456110
Alignment:
Q  54 ttgcttacatgcaatgtggcaatttgggcccactaaaaacaagttaagcaaccaa 108  Q
    ||||||| ||| ||||||||||||| ||||||| |||| |||||| |||||||||    
T  23456164 ttgcttaaatgaaatgtggcaatttaggcccacaaaaatcaagttcagcaaccaa 23456110  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 22655960 - 22655872
Alignment:
Q  2 ttgcttattgttaatcaccattggagtaaaattgattgagattgcttataagttgcttacatgcaatgtggcaatttgggcccactaaaa 91  Q
    ||||||||| ||||| |||||||||  |||| ||||| | |||| ||| |  ||||||| ||||||||||||||||||| ||||| ||||    
T  22655960 ttgcttatt-ttaattaccattggaacaaaaatgattaaaattgtttagagattgcttaaatgcaatgtggcaatttggacccacaaaaa 22655872  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13324243 - 13324302
Alignment:
Q  1 gttgcttattgttaatcaccattggagtaaaattgattgagattgcttataagttgctta 60  Q
    |||||||||||||||||||| ||| |||||||||||||||| ||| ||| || |||||||    
T  13324243 gttgcttattgttaatcaccgttgaagtaaaattgattgaggttgtttagaaattgctta 13324302  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 48093871 - 48093816
Alignment:
Q  5 cttattgttaatcaccattggagtaaaattgattgagattgcttataagttgctta 60  Q
    |||||||||||||||||||| |||||||||||||||| ||| ||| || |||||||    
T  48093871 cttattgttaatcaccattgaagtaaaattgattgaggttgtttagaaattgctta 48093816  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 42553519 - 42553448
Alignment:
Q  20 cattggagtaaaattgattgagattgcttataagttgcttacatgcaatgtggcaatttgggcccactaaaa 91  Q
    ||||| ||||||| ||||| | |||||||| |  ||||||| ||||||||||||| ||||||||||| ||||    
T  42553519 cattgaagtaaaaatgattaaaattgcttagagattgcttagatgcaatgtggcagtttgggcccacaaaaa 42553448  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5666116 - 5666175
Alignment:
Q  1 gttgcttattgttaatcaccattggagtaaaattgattgagattgcttataagttgctta 60  Q
    |||||||||||||||||||| ||| |||||||||||||||| ||| ||| || |||||||    
T  5666116 gttgcttattgttaatcaccgttgaagtaaaattgattgaggttgtttagaaattgctta 5666175  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 16234087 - 16234160
Alignment:
Q  18 accattggagtaaaattgattgagattgcttataagttgcttacatgcaatgtggcaatttgggcccactaaaa 91  Q
    ||||||||||||||| ||||| | |||||||| |  || |||| ||||||||||||| || |||||||| ||||    
T  16234087 accattggagtaaaaatgattaaaattgcttagagatttcttagatgcaatgtggcagttcgggcccacaaaaa 16234160  T

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Target: scaffold0097 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 25857 - 25937
Alignment:
Q  54 ttgcttacatgcaatgtggcaatttgggcccactaaaaacaagttaagcaaccaaaataaattcttccattgaacatgctct 135  Q
    ||||||| ||||||||||||||||||||||||| ||||  |||||||| ||| || |||| |||| |||||| | |||||||    
T  25857 ttgcttagatgcaatgtggcaatttgggcccac-aaaagtaagttaagaaacaaagataagttctcccattggagatgctct 25937  T

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Target: scaffold0097; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25816 - 25863
Alignment:
Q  1 gttgcttattgttaatcaccattggagtaaaattgattgagattgctta 49  Q
    |||||||||||| | | ||||||||||||||||||||||||||||||||    
T  25816 gttgcttattgt-agttaccattggagtaaaattgattgagattgctta 25863  T

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