View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3958_high_3 (Length: 250)
Name: NF3958_high_3
Description: NF3958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3958_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 28215125 - 28214874
Alignment:
| Q |
1 |
tttatattttgcatgtaataatgtttaagtgaattgatatgatgatatcagattagggtcataacagatctaagcttcatagtgtatcgacacatttact |
100 |
Q |
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| T |
28215125 |
tttatattttgcatgtaataatgtttaagtggattgatatgatgatgtcagattaggatcataacagatctaagcttcatagtgtatcgacacatttact |
28215026 |
T |
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| Q |
101 |
tgcaagtcataaaaccaagaggttttgttgttctaacgcttaatgacaataaaagttttttgttttgaaagaaataaaagttaaactcatatgtttgtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28215025 |
tgcaagtcataaaaccaagaggttttgttgttctaacgcttaatgacaataaaagttttttgttttgaaagaaataaaagttaaactcatatgtttgtga |
28214926 |
T |
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| Q |
201 |
aatata---------tctttatcaactagaccaacatatattgcctatgata |
243 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28214925 |
aatatataaatcatctctttatcaactagaccaacatatattgcctatgata |
28214874 |
T |
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