View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3958_low_2 (Length: 350)
Name: NF3958_low_2
Description: NF3958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3958_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 169 - 332
Target Start/End: Original strand, 42572971 - 42573134
Alignment:
| Q |
169 |
tgaaggatatttggaacactaagatatcgtgggaattgaataataagattatggtgagtttagttccttgaactggttgtttgtgctatgctactcattt |
268 |
Q |
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| T |
42572971 |
tgaaggatatttggaacactaagatatcgtgggaattgaataataagattatggtgagtttagttccttgaactggttgtttgtgctatgctactcattt |
42573070 |
T |
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| Q |
269 |
tagcattgatttattctttttctaaagatgcaatgtggtcttgagtccttaaacaatacatgat |
332 |
Q |
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| T |
42573071 |
tagcattgatttattctttttctaaagatgcaatgtggtcttgagtccttaaacaatacatgat |
42573134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 42577829 - 42577891
Alignment:
| Q |
213 |
aagattatggtgagtttagttccttgaactggttgtttgtgctatgctactcattttagcatt |
275 |
Q |
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| T |
42577829 |
aagattatggtgagtttagttcatttaactggttgtttatgttatgctactcattttagcatt |
42577891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 42570646 - 42570698
Alignment:
| Q |
216 |
attatggtgagtttagttccttgaactggttgtttgtgctatgctactcattt |
268 |
Q |
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| T |
42570646 |
attatggtgagtttagtacctttaactggttgtttatgctatgttactcattt |
42570698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 42594525 - 42594572
Alignment:
| Q |
220 |
tggtgagtttagttccttgaactggttgtttgtgctatgctactcatt |
267 |
Q |
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| T |
42594525 |
tggtgagtttagttccttgaattggttgtttatactatgctagtcatt |
42594572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 9781166 - 9781316
Alignment:
| Q |
1 |
tctttcttaatttatttgctcagctt-aaagtgagtttgttggtttatatatagaagataagataataaaattgtgattttcaacattctcaaattacta |
99 |
Q |
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||||| ||||||| |||||| ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
9781166 |
tctttgttaatttgtttgctgagctttaaagtgagtttgttggtttcaatatagaagataagataagaaaattgtgattttcaacattctcaagttacta |
9781265 |
T |
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| Q |
100 |
actnnnnnnngaaaagacgaaaataagataagatatgaattggtatattcag |
151 |
Q |
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| T |
9781266 |
aataaaaaaagaaaagacg-aaataagataagatatgaattggtatattcag |
9781316 |
T |
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