View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3958_low_3 (Length: 292)
Name: NF3958_low_3
Description: NF3958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3958_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 1006998 - 1007197
Alignment:
| Q |
1 |
attgaaaaggaatagaataataataatacctagagagttgacatctgaagagggatttggaagcggaatgtgaatgtgaattgaaggaagaacggtggcg |
100 |
Q |
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| T |
1006998 |
attgaaaaggaatagaagaata---atacctagagagttgacatctgaagagggatttggaagcggaatgtgaatgtgaattgaaggaagaacggtggcg |
1007094 |
T |
|
| Q |
101 |
acattaggggttacatttggtgaatcatcagaagaagaagaatctgatacatcaatttcatcttcatcccatggaaatggcctcttcatctcaacaaaca |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1007095 |
acattaggggtttcatttggtgaatcatcagaagaagaagaatctgatacatcaatttcatcttcatcccatggaaatggcctcttcatctcaacaaaca |
1007194 |
T |
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