View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3959_high_4 (Length: 352)

Name: NF3959_high_4
Description: NF3959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3959_high_4
NF3959_high_4
[»] chr1 (1 HSPs)
chr1 (4-294)||(38959649-38959940)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 4 - 294
Target Start/End: Original strand, 38959649 - 38959940
Alignment:
Q  4 agagagcggaagaggcgtgtgcaggagacgccactagcggtgaatgtgtggcagcgtgggatgaggtggaggaattgagtgcagcggcaagccatgcaag 103  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38959649 agagtgcggaagaggcgtgtgcaggagacgccactagcggtgaatgtgtggcggcgtgggatgaggtggaggaattgagtgcagcggcaagccatgcaag 38959748  T
Q  104 ggataagaaaaagacgtcggaccctctcgaggaatactgcaaggacaatccggagactgatgagtgtcgcacatatgataactgaatgatactatcaaat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38959749 ggataagaaaaagacgtcggaccctctcgaggaatactgcaaggacaatccggagactgatgagtgtcgcacatatgataactgaatgatactatcaaat 38959848  T
Q  204 caaatctccc-ttttattatcatttctgttgtgtattaattcattttcatttaagcatgattgaataatccatatataccatctttacaagt 294  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38959849 caaatctccctttttattatcatttctgttgtgtattaattaattttcatttaagcatgattgaataatccatatataccatctttacaagt 38959940  T

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