View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3959_high_9 (Length: 250)
Name: NF3959_high_9
Description: NF3959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3959_high_9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 31 - 250
Target Start/End: Complemental strand, 32756748 - 32756529
Alignment:
| Q |
31 |
caatgaaatgagaataaaggatataccagtcaactaaattggacatgctatatacttaccaaataagaaccaaatgccaaagccaagcaactgctggtaa |
130 |
Q |
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| T |
32756748 |
caatgaaatgagaataaaggatataccagtcaactaaattggacatactaaatacttaccaaataagaaccaaatgccaaagccaagcaactgctggtaa |
32756649 |
T |
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| Q |
131 |
tggtgagtgcattgatacttaacaattcaacacctgcatcatcaccaaagaaacttataaaaatatagtcatgcaattctattgtatttatggaaaaaat |
230 |
Q |
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| T |
32756648 |
tggtgagtgcattgatacttaacaattcaacacctgcatcatcaccaaagaaacttataaaaatatagtcatgcaattctattgtatttatggaaaaaat |
32756549 |
T |
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| Q |
231 |
aagaatgaaatccaacacat |
250 |
Q |
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| T |
32756548 |
aagaatgaaatccaacacat |
32756529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 32762695 - 32762550
Alignment:
| Q |
32 |
aatgaaatgagaataaaggatataccagtcaactaaattggacatgctatatacttaccaaataagaaccaaatgccaaagccaagcaactgctggtaat |
131 |
Q |
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||||||| | ||||||||||| ||| ||| ||||||||| | || |||||| ||||| |||||||| |||||||||||||||| | ||| ||| |
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| T |
32762695 |
aatgaaacgggaataaaggatgtactagtacactaaattgaa-atactatatgcttactaaataagacccaaatgccaaagccagaccact------aat |
32762603 |
T |
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| Q |
132 |
ggtgagtgcattgatacttaacaattcaacacctgcatcatcaccaaagaaac |
184 |
Q |
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| T |
32762602 |
ggtgagttcatttattcttaacaattcaacacctgcagcatcatcaaagaaac |
32762550 |
T |
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