View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3959_low_1 (Length: 705)
Name: NF3959_low_1
Description: NF3959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3959_low_1 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 99; Significance: 2e-48; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 14567979 - 14567873
Alignment:
| Q |
143 |
aattggtctatggtcaggtcatgcaggaggaaagcgacgcaaccagaggatagaggacgggacatgtcaaaggtttcgaagcggcaaggaggagcggtat |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14567979 |
aattggtctatggtcaggtcatgcaggaggaaagcgacgcaaccggaggatagaggacgggacatgtcaagggtttcgaagcggcaaggaggagcggtat |
14567880 |
T |
|
| Q |
243 |
tggttag |
249 |
Q |
| |
|
||||||| |
|
|
| T |
14567879 |
tggttag |
14567873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 14568107 - 14568041
Alignment:
| Q |
14 |
cagagagagcgagtggcggtgactctagggcacgcctaggacaactaggccggagtgtttcaccggc |
80 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14568107 |
cagagagagcgagtggcggtgactctagggcacgcctaggacaactaggccggagtgtttcaccggc |
14568041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 11142118 - 11142068
Alignment:
| Q |
169 |
gaggaaagcgacgcaaccagaggatagaggacgggacatgtcaaaggtttc |
219 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||| ||||| |||||| |
|
|
| T |
11142118 |
gaggaaagcgacgcaaccggaggatcgaggacgggacaggtcaagggtttc |
11142068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 550 - 675
Target Start/End: Original strand, 26189019 - 26189143
Alignment:
| Q |
550 |
aacgaaattcttatggacaagtctatggttttgttagattattcgaatgtgaagaatgttgagaagttatcacatgctttgaacaacgtttggttcggac |
649 |
Q |
| |
|
|||| ||||||| ||||||||| ||||| ||||| || || ||| ||||| ||||||||||||||| |||| || || || || |||||||| |||| |
|
|
| T |
26189019 |
aacggaattcttgtggacaagtatatgggtttgtgaggtt-ttcaaatgttaagaatgttgagaagctatcgcacaaattaaataatgtttggtttggac |
26189117 |
T |
|
| Q |
650 |
acctaagggtttgggcacgcgaggct |
675 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
26189118 |
accttagggtttgggcacgcgaggct |
26189143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 847 - 781
Alignment:
| Q |
169 |
gaggaaagcgacgcaaccagaggatagaggacgggacatgtcaaaggtttcgaagcggcaaggagga |
235 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||||||||||||| |||||| |||||||| |||||| |
|
|
| T |
847 |
gaggaaagcgacacaaccgaaggatcgaggacgggacatgtcaagggtttcaaagcggcatggagga |
781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 609 - 659
Target Start/End: Original strand, 12322256 - 12322306
Alignment:
| Q |
609 |
tgagaagttatcacatgctttgaacaacgtttggttcggacacctaagggt |
659 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| || || |||||||| |
|
|
| T |
12322256 |
tgagaaattatcacatgctttgaacaatgtttggtttggtcatctaagggt |
12322306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 32221346 - 32221309
Alignment:
| Q |
169 |
gaggaaagcgacgcaaccagaggatagaggacgggaca |
206 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
32221346 |
gaggaaagcgacgcaaccggaggatcgaggacgggaca |
32221309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 22746079 - 22746021
Alignment:
| Q |
144 |
attggtctatggtcaggtcatgcaggaggaaagcgacgcaaccagaggatagaggacgg |
202 |
Q |
| |
|
|||||||| | || |||||| | | ||||||||||||||||||||||||| |||||||| |
|
|
| T |
22746079 |
attggtctgtagttaggtcaagaaagaggaaagcgacgcaaccagaggatcgaggacgg |
22746021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University