View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3959_low_11 (Length: 236)
Name: NF3959_low_11
Description: NF3959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3959_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 39307793 - 39308003
Alignment:
| Q |
10 |
gagatgaatatacatttagagtgagttgatagattatgaaatgtgagaaatgatgtgtttaagttattaagcgttgatccagcagggatcccgtaaatcg |
109 |
Q |
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| T |
39307793 |
gagatgaatatacatttagggtgagttgatagattataaaatgtgagaaatgctgtgtttaagttattaagtgttgatccagcagggatcccgtaaatcg |
39307892 |
T |
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| Q |
110 |
gatacctaaacacaagttccatttgttagacggacaaagaaaaatttaggaaatcaattatatatgacggcaaaagacgtacattttgaaacctaccatg |
209 |
Q |
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| T |
39307893 |
gatacctaaacacaagttccatttgttagacggacaaagaaaaatttagaaaatcaattatatatgacggcaaaagacgtacattttgaaacctaccatg |
39307992 |
T |
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| Q |
210 |
ccacagaaaac |
220 |
Q |
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||||||||||| |
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| T |
39307993 |
ccacagaaaac |
39308003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 39299973 - 39300169
Alignment:
| Q |
17 |
atatacatttagagtgagttgatagattatgaaatgtgagaaatgatgtgtttaagttattaagcgttgatccagcagggatcccgtaaatcggatacct |
116 |
Q |
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| T |
39299973 |
atatacttttaaagtgagcagatagattgtgaaaggttagaaatgctgcttttatgtttttaagcgttggtttggcgcggatcccataaattggatacct |
39300072 |
T |
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| Q |
117 |
aaacacaagttccatttgttagacggacaaagaaaaatttaggaaatcaattatatatgacggcaaaagacgtacattttgaaacctaccatgccacaga |
216 |
Q |
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| T |
39300073 |
gaacacaagtttgatttgttagacggacaaagaaaaatttagaaa-------ataaatgacggcaaaagatgtacattttgaaacctaccatgccacaga |
39300165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 26563660 - 26563863
Alignment:
| Q |
13 |
atgaatatacatttagagtgagttgatagattatgaaatgtgagaaatgatgtgtttaagttattaagcgttgatccagcagggatcccgtaaatcggat |
112 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||| ||||| ||||||||| || ||||| |||||||| |||||||| ||| |||||||| |
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| T |
26563660 |
atgaatatacatttagattgagttgatagattatgaacggtgaaaaatgttgtgtttaaatttttaagtgttgatcccgcagggatttcgtgaatcggat |
26563759 |
T |
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| Q |
113 |
acctaaacacaagttccatttgttagacggacaaagaaaaatttaggaaatcaattatatatgacggcaaaagacgtacattttgaaacctaccatgcca |
212 |
Q |
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| T |
26563760 |
acctaaacgcaagtttgatttgttagacggacaaagaaaaattttggaaataaat----tatgacggcaaaagatgtacattttgaaacctaccatgcca |
26563855 |
T |
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| Q |
213 |
cagaaaac |
220 |
Q |
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||||||| |
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| T |
26563856 |
aagaaaac |
26563863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 26555689 - 26555887
Alignment:
| Q |
13 |
atgaatatacatttagagtgagttgatagattatgaaatgtgagaaatgatgtgtttaagttattaagcgttgatccagcagggatcccgtaaatcggat |
112 |
Q |
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||||||| ||| ||||| |||||||||||||||| ||| |||||||||| || |||||||| ||||||||||||| |||||||| |||||||| ||| |
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| T |
26555689 |
atgaatagacaattagattgagttgatagattattaaaggtgagaaatgctgcatttaagtttttaagcgttgatc---cagggatctcgtaaatcagat |
26555785 |
T |
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| Q |
113 |
acctaaacacaagttccatttgttagacggacaaagaaaaatttaggaaatcaattatatatgacggcaaaagacgtacattttgaaacctaccatgcca |
212 |
Q |
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|||||||||||||||| |||||||||| ||| ||||||||||| ||||| ||| ||||| ||||||| | ||| ||| |||||||||||||||| |
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| T |
26555786 |
acctaaacacaagttcgatttgttagaaagac--agaaaaatttaagaaataaat----tatgatggcaaaatatgtatgtttagaaacctaccatgcca |
26555879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 220
Target Start/End: Complemental strand, 26554977 - 26554826
Alignment:
| Q |
65 |
tgtttaagttattaagcgttgatccagcagggatcccgtaaatcggatacctaaacacaagttccatttgttagacggacaaagaaaaatttaggaaatc |
164 |
Q |
| |
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|||||||||| |||| ||||||||||||| |||| | |||||||||||||||||||||| ||| |||||| | ||| || |||||||||||||||||| |
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| T |
26554977 |
tgtttaagtttttaattgttgatccagcagtgatcacataaatcggatacctaaacacaa-ttcaatttgtcaaacgaactaagaaaaatttaggaaata |
26554879 |
T |
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| Q |
165 |
aattatatatgacgg-caaaagacgtacattttgaaacctaccatgccacagaaaac |
220 |
Q |
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||| ||||||| |||||| |||||||| |||||||||||||||||||||||| |
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| T |
26554878 |
aat----catgacggaaaaaagatgtacatttcgaaacctaccatgccacagaaaac |
26554826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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