View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3959_low_2 (Length: 473)

Name: NF3959_low_2
Description: NF3959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3959_low_2
NF3959_low_2
[»] chr8 (1 HSPs)
chr8 (19-462)||(32525737-32526180)
[»] chr1 (10 HSPs)
chr1 (19-462)||(6838399-6838842)
chr1 (156-462)||(2797341-2797647)
chr1 (21-304)||(8977148-8977425)
chr1 (21-298)||(6385041-6385315)
chr1 (309-462)||(8977466-8977619)
chr1 (21-304)||(28600206-28600495)
chr1 (309-439)||(28600536-28600666)
chr1 (318-460)||(6384839-6384981)
chr1 (140-243)||(49211817-49211920)
chr1 (144-257)||(26401664-26401777)
[»] chr5 (3 HSPs)
chr5 (21-310)||(20082930-20083217)
chr5 (306-402)||(20083249-20083345)
chr5 (144-257)||(17794153-17794266)
[»] chr3 (2 HSPs)
chr3 (29-304)||(2802958-2803230)
chr3 (306-432)||(2802795-2802920)
[»] chr2 (2 HSPs)
chr2 (240-296)||(13812434-13812490)
chr2 (318-462)||(13812229-13812376)
[»] chr7 (1 HSPs)
chr7 (140-243)||(35939911-35940014)
[»] chr4 (2 HSPs)
chr4 (140-243)||(25429253-25429356)
chr4 (144-257)||(1542031-1542144)


Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Complemental strand, 32526180 - 32525737
Alignment:
Q  19 tatcaatcagccaattctcacttgattcgatgctagagaaacatgttgcaacgaataagtgatcctcctcttcctcttgatcaacaacctttgcctcatc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32526180 tatcaatcagccaattctcacttgattcgatgctagagaaacatgttgcaacgaataagtgatcctcctcttcctcttgatcaacaacctttgcctcatc 32526081  T
Q  119 attatgttgttgattcctatttttacaaataactgcttcatgccccatttgattacacttggtacacttagcatcaggtcttctccaacatctaaagggt 218  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32526080 attatgttgttgattcctatttttacaaatatcagcttcatgccccatttgattacacttggtacacttagcatcaggtcttctccaacatcttaagggt 32525981  T
Q  219 ggatgacctttctttccacagtgttgacatggaggataagattttctttgaattacattcttttctgttgcattggctgatgttgaacccacattctgct 318  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32525980 ggatgacctttctttccatagtgttgacatggaggataagattttcttcgaattacattcttttctgttgcattggctgatgttgaacccacattctgct 32525881  T
Q  319 gcttggctgctaatgctccttcaagtgttgttttctctctcatcaatctcctctgttcttgtgccttcaatgcattaagcaattctgctaaagagatttt 418  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  32525880 gcttggctgctaatgctccttcaagtgttgtttcctctctcatcaatctcctctgttcttgtgccttcaatgcattaagcaattctgcaaaagaaatttt 32525781  T
Q  419 tgagaaatctttggtattctccaaagtagtgatggttgcttcat 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32525780 tgagaaatctttggtattctccaaagtagtgatggttgcttcat 32525737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Original strand, 6838399 - 6838842
Alignment:
Q  19 tatcaatcagccaattctcacttgattcgatgctagagaaacatgttgcaacgaataagtgatcctcctcttcctcttgatcaacaacctttgcctcatc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6838399 tatcaatcagccaattctcacttgattcgatgctagagaaacatgttgcaacgaataagtgatcctcctcttcctcttgatcaacaacctttgcctcatc 6838498  T
Q  119 attatgttgttgattcctatttttacaaataactgcttcatgccccatttgattacacttggtacacttagcatcaggtcttctccaacatctaaagggt 218  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6838499 attatgttgttgattcctatttttacaaataacagcttcatgccccatttgattacacttggtacacttagcatcaggtcttctccaacatctaaagggt 6838598  T
Q  219 ggatgacctttctttccacagtgttgacatggaggataagattttctttgaattacattcttttctgttgcattggctgatgttgaacccacattctgct 318  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6838599 ggatgacctttctttccacagtgttgacgtggaggataagattttcttcgaattgcattcttttctgttgcattggctgatgttgaacccacattctgct 6838698  T
Q  319 gcttggctgctaatgctccttcaagtgttgttttctctctcatcaatctcctctgttcttgtgccttcaatgcattaagcaattctgctaaagagatttt 418  Q
     | |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  6838699 acatggctgctaatgctccttcaagtgttgtttcctctctcatcaatcttctctgttcttgtgccttcaatgcattaagcaattctgcaaaagaaatttt 6838798  T
Q  419 tgagaaatctttggtattctccaaagtagtgatggttgcttcat 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6838799 tgagaaatctttggtattctccaaagtagtgatggttgcttcat 6838842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 156 - 462
Target Start/End: Original strand, 2797341 - 2797647
Alignment:
Q  156 tcatgccccatttgattacacttggtacacttagcatcaggtcttctccaacatctaaagggtggatgacctttctttccacagtgttgacatggaggat 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2797341 tcatgccccatttgattacacttggtacacttagcatcaggtcttctccaacatctaaagggtggatgacctttctttccacagtgttgacatggaggat 2797440  T
Q  256 aagattttctttgaattacattcttttctgttgcattggctgatgttgaacccacattctgctgcttggctgctaatgctccttcaagtgttgttttctc 355  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  2797441 aagattttcttcgaattacattcttttctgttgcattggctgatgttgagcccacattatgctgcttggctgctaatgctccttcaagtgttgtttcctc 2797540  T
Q  356 tctcatcaatctcctctgttcttgtgccttcaatgcattaagcaattctgctaaagagatttttgagaaatctttggtattctccaaagtagtgatggtt 455  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2797541 tctcatcaatcttctctgttctagtgccttcaatgcattaagcaattctgccaaagaaatttttgagaaatctttggtattctccaaagtagtgatggtt 2797640  T
Q  456 gcttcat 462  Q
    |||||||    
T  2797641 gcttcat 2797647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 304
Target Start/End: Original strand, 8977148 - 8977425
Alignment:
Q  21 tcaatcagccaattctcacttgattcgatgctagagaaacatgttgcaacgaataagtgatcctcctcttcctcttgatcaacaacctttgcctcatcat 120  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||     
T  8977148 tcaatcagccaattctcatttgatttgatgctagagaaacatgttgcaacgaataagtgatcctcatcttccttttgatcaacaacctttgcctcatcaa 8977247  T
Q  121 tatgttgttgattcctatttttacaaataactgcttcatgccccatttgattacacttggtacacttagcatcaggtcttctccaacatctaaagggtgg 220  Q
    ||| |||||||||||||||||||||||||||  ||||||||||||||||||||      || ||||||||||||||||||||||||||||||||||||||    
T  8977248 tatcttgttgattcctatttttacaaataacaacttcatgccccatttgatta------gtgcacttagcatcaggtcttctccaacatctaaagggtgg 8977341  T
Q  221 atgacctttctttccacagtgttgacatggaggataagattttctttgaattacattcttttctgttgcattggctgatgttga 304  Q
    ||||||||| |||||||| |||||| |||| | ||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  8977342 atgacctttttttccacaatgttgaaatggcgtataagattttctttgaatttcattcttttctgttgcattggctgattttga 8977425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 21 - 298
Target Start/End: Complemental strand, 6385315 - 6385041
Alignment:
Q  21 tcaatcagccaattctcacttgattcgatgctagagaaacatgttgcaacgaataagtgatcctcctcttcctcttgatcaacaacctttgcctcatcat 120  Q
    |||||||  ||||||||||||||||||||| ||||||||||||| |||| ||| |||| | ||| |||||| ||||| |||| || |||| |||  |||     
T  6385315 tcaatcaatcaattctcacttgattcgatgttagagaaacatgtcgcaatgaacaagtcacccttctcttcttcttgttcaataatcttttcctg-tcac 6385217  T
Q  121 tatgttgttgattcctatttttacaaataactgcttcatgccccatttgattacacttggtacacttagcatcaggtcttctccaacatctaaagggtgg 220  Q
    || ||||||||||| |||||| |||  |||  ||||||||||| ||||||||||||||||| | |||| |||||||||||||||||| |||||| |||||    
T  6385216 tacgttgttgattcttattttcacatgtaatagcttcatgccctatttgattacacttggtgcgcttaacatcaggtcttctccaacctctaaatggtgg 6385117  T
Q  221 atgacctttctttccacagtgttgacatggaggataagattttctttgaattacattcttttctgttgcattggctga 298  Q
     |||||||||||||  |||||| |||| ||| |  ||||||||||| ||||| |||| |||||| || ||||||||||    
T  6385116 gtgacctttctttc--cagtgtagacaaggaagtgaagattttcttcgaatttcattattttcttttacattggctga 6385041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 309 - 462
Target Start/End: Original strand, 8977466 - 8977619
Alignment:
Q  309 acattctgctgcttggctgctaatgctccttcaagtgttgttttctctctcatcaatctcctctgttcttgtgccttcaatgcattaagcaattctgcta 408  Q
    ||||| || ||||||||||||||||||||||||||||||||||  ||| |||||||||| || ||||||||  ||||||||||||||||||||||||| |    
T  8977466 acattttgatgcttggctgctaatgctccttcaagtgttgtttcttctttcatcaatcttctatgttcttgccccttcaatgcattaagcaattctgcca 8977565  T
Q  409 aagagatttttgagaaatctttggtattctccaaagtagtgatggttgcttcat 462  Q
    ||||  ||||| |||||||| |||||||||| ||||||||||||||| ||||||    
T  8977566 aagattttttttagaaatctctggtattctctaaagtagtgatggttacttcat 8977619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 304
Target Start/End: Original strand, 28600206 - 28600495
Alignment:
Q  21 tcaatcagccaattctcacttgattcgatgctagagaaacatg----ttgcaacgaataagtga---tcctcctcttcctcttgatcaacaacctttgcc 113  Q
    ||||| ||||||||||||||||||||||| |||||||||||||    |||||  ||| ||||||   ||||||||||| |||||||| ||| |  |||||    
T  28600206 tcaattagccaattctcacttgattcgattctagagaaacatgcattttgcattgaacaagtgatcctcctcctcttcttcttgatc-acatcacttgcc 28600304  T
Q  114 tcatcattatgttgttgattcctatttttacaaataactgcttcatgccccatttgattacacttggtacacttagcatcaggtcttctccaacatctaa 213  Q
    |||||| ||||||||||||||||||| | | | ||||  |||||||| | ||||||| || || | || ||||||||||   || ||||||||||| |||    
T  28600305 tcatcactatgttgttgattcctattctgaaatataagagcttcatgtctcatttgactagacatagtgcacttagcatttcgttttctccaacatttaa 28600404  T
Q  214 agggtggatgacctttctttccacagtgttgacatggaggataagattttctttgaattacattcttttctgttgcattggctgatgttga 304  Q
    | | |||||||| |||||||||||| | |||  | || |||||||||||||||  |||| ||||||||||| |||| || |||||||||||    
T  28600405 atgatggatgacatttctttccacaatattggaaaggtggataagattttcttcaaatttcattcttttcttttgctttcgctgatgttga 28600495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 439
Target Start/End: Original strand, 28600536 - 28600666
Alignment:
Q  309 acattctgctgcttggctgctaatgctccttcaagtgttgttttctctctcatcaatctcctctgttcttgtgccttcaatgcattaagcaattctgcta 408  Q
    ||||| ||||| ||||||||| | |||||||    |||||| | ||||||||||||||| || ||||||||  |||||||||  |||| ||||||| | |    
T  28600536 acattttgctgattggctgctgaagctcctttcgttgttgtgtcctctctcatcaatcttctatgttcttgcaccttcaatggtttaatcaattcttcca 28600635  T
Q  409 aagagatttttgagaaatctttggtattctc 439  Q
    |||| |||||||| ||||| |||||||||||    
T  28600636 aagatatttttgaaaaatccttggtattctc 28600666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 318 - 460
Target Start/End: Complemental strand, 6384981 - 6384839
Alignment:
Q  318 tgcttggctgctaatgctccttcaagtgttgttttctctctcatcaatctcctctgttcttgtgccttcaatgcattaagcaattctgctaaagagattt 417  Q
    ||||||| |||||| ||| ||||   |||||||| |||||||||   |||  ||| |||||||| |||||||||||||||| ||| ||  |||||  |||    
T  6384981 tgcttggttgctaaagctgcttctcatgttgtttcctctctcatacgtcttatctattcttgtgtcttcaatgcattaagctattttgtcaaagaacttt 6384882  T
Q  418 ttgagaaatctttggtattctccaaagtagtgatggttgcttc 460  Q
    |||||||||  ||||||||||  || |||||||||||| ||||    
T  6384881 ttgagaaattcttggtattcttaaacgtagtgatggttacttc 6384839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 49211920 - 49211817
Alignment:
Q  140 tttacaaataactgcttcatgccccatttgattacacttggtacacttagcatcaggtcttctccaacatctaaagggtggatgacctttctttccacag 239  Q
    ||||||||| ||  ||||||| ||||||| ||| |||||| | ||||| ||||| || |||||||||||| |||| ||||| |||||  | ||||| |||    
T  49211920 tttacaaatcacatcttcatgacccatttcattgcacttgttgcactttgcatctggccttctccaacatttaaatggtgggtgacccatttttccgcag 49211821  T
Q  240 tgtt 243  Q
    ||||    
T  49211820 tgtt 49211817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 257
Target Start/End: Complemental strand, 26401777 - 26401664
Alignment:
Q  144 caaataactgcttcatgccccatttgattacacttggtacacttagcatcaggtcttctccaacatctaaagggtggatgacctttctttccacagtgtt 243  Q
    ||||| || |||||||| || ||||| ||||||||| | || || |||| |||||  |||||||||||||| || ||||||||  | ||   ||||||||    
T  26401777 caaattacagcttcatgaccaatttggttacacttgctgcattttgcattaggtcgcctccaacatctaaaaggaggatgacccattttgttacagtgtt 26401678  T
Q  244 gacatggaggataa 257  Q
    | ||||||||||||    
T  26401677 ggcatggaggataa 26401664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 21 - 310
Target Start/End: Original strand, 20082930 - 20083217
Alignment:
Q  21 tcaatcagccaattctcacttgattcgatgctagagaaacatgttgcaacgaataagtgatcctcctcttcctcttgatcaacaacctttgcctcatcat 120  Q
    ||||||| ||||||||  |||||||| | ||||||||||||| ||||||| |||||||||||||||||||| |||| || |||||| ||||| ||||||     
T  20082930 tcaatcaaccaattctatcttgattcaaagctagagaaacatcttgcaacaaataagtgatcctcctcttcttcttcattaacaacatttgcgtcatcac 20083029  T
Q  121 tatgttgttgattcctatttttacaaataactgcttcatgccccatttgattacacttggtacacttagcatcaggtcttctccaacatctaaagggtgg 220  Q
    || |||||||||| | ||||||||||||||  ||||||| || |||||| |||||||| ||||||||||||| | ||| || |||||||||||||||||     
T  20083030 taagttgttgatttc-atttttacaaataatagcttcattcctcatttggttacacttagtacacttagcattatgtcatccccaacatctaaagggtga 20083128  T
Q  221 atgacctttctttccacagtgttgacatggaggataagattttctttgaattacattcttttctgttgcattggctgatgttgaacccac 310  Q
    || ||||||||| || ||||||| ||| ||||||| | | |||||| ||||| ||||||||||| ||| | |||||||||| || |||||    
T  20083129 attacctttcttccctcagtgttaacagggaggat-acaatttcttcgaatttcattcttttctcttgtagtggctgatgtcgatcccac 20083217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 306 - 402
Target Start/End: Original strand, 20083249 - 20083345
Alignment:
Q  306 cccacattctgctgcttggctgctaatgctccttcaagtgttgttttctctctcatcaatctcctctgttcttgtgccttcaatgcattaagcaatt 402  Q
    ||||||||  ||||||||| ||||||||||||||||| |||||||| ||||||||| ||||| |||| |||||| ||||| |||||| |||||||||    
T  20083249 cccacatttggctgcttggatgctaatgctccttcaaatgttgtttcctctctcattaatcttctctcttcttgcgcctttaatgcaataagcaatt 20083345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 257
Target Start/End: Complemental strand, 17794266 - 17794153
Alignment:
Q  144 caaataactgcttcatgccccatttgattacacttggtacacttagcatcaggtcttctccaacatctaaagggtggatgacctttctttccacagtgtt 243  Q
    ||||| || |||||||| || ||||| ||||||||| | || || |||| |||||  |||||||||||||| || ||||||||  | ||   ||||||||    
T  17794266 caaattacagcttcatgaccaatttggttacacttgctgcattttgcattaggtcgcctccaacatctaaaaggaggatgacccattttgttacagtgtt 17794167  T
Q  244 gacatggaggataa 257  Q
    | ||||||||||||    
T  17794166 ggcatggaggataa 17794153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 29 - 304
Target Start/End: Complemental strand, 2803230 - 2802958
Alignment:
Q  29 ccaattctcacttgattcgatgctagagaaacatgttgcaacgaataagtgatcctcctcttcctcttgatcaacaacctttgcctcatcattatgttgt 128  Q
    |||||||||||||||||||||||||||||||||||||| ||| || |||| |||||||||   ||||||| ||||| |||||||| ||||| ||| ||||    
T  2803230 ccaattctcacttgattcgatgctagagaaacatgttgtaacaaacaagtaatcctcctc---ctcttgaccaacatcctttgccccatcactattttgt 2803134  T
Q  129 tgattcctattt-ttacaaataactgcttcatgccccatttgattacacttggtacacttagcatcaggtcttctccaacatctaaagggtggatgacct 227  Q
    |||||| | ||| ||||| |||||  ||||| | |||||||||||||||   |  ||||||||||||||||||||||| | | |||| |||| |||||||    
T  2803133 tgattcttttttcttacatataacaacttcacgtcccatttgattacacaatg--cacttagcatcaggtcttctccaccctataaatggtgaatgacct 2803036  T
Q  228 ttctttccacagtgttgacatggaggataagattttctttgaattacattcttt-tctgttgcattggctgatgttga 304  Q
    ||||||||||| |||||||| || ||||||||||||| | ||||| |||||||| | | |||||||||||||||||||    
T  2803035 ttctttccacaatgttgacaaggtggataagattttcatcgaatttcattctttatgttttgcattggctgatgttga 2802958  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 306 - 432
Target Start/End: Complemental strand, 2802920 - 2802795
Alignment:
Q  306 cccacattctgctgcttggctgctaatgctccttcaagtgttgttttctctctcatcaatctcctctgttcttgtgccttcaatgcattaagcaattctg 405  Q
    |||||||| || ||||| ||||||||  ||| ||| | |||||| | ||||||||||||||| |  |||||||| ||||||||||||||||||||||||     
T  2802920 cccacattttgatgctttgctgctaaa-ctcgttcgactgttgtgtcctctctcatcaatcttccatgttcttgcgccttcaatgcattaagcaattcta 2802822  T
Q  406 ctaaagagatttttgagaaatctttgg 432  Q
    | ||||| |||||||||||||| ||||    
T  2802821 ccaaagaaatttttgagaaatccttgg 2802795  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 13812490 - 13812434
Alignment:
Q  240 tgttgacatggaggataagattttctttgaattacattcttttctgttgcattggct 296  Q
    |||||||| || |||||||||||| |||||||| ||||||||||| |||||||||||    
T  13812490 tgttgacaaggcggataagattttttttgaatttcattcttttcttttgcattggct 13812434  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 462
Target Start/End: Complemental strand, 13812376 - 13812229
Alignment:
Q  318 tgcttggctgctaatgctccttcaagtgttgttttctctctcatcaatctcctctgttcttgtgccttcaatgcattaa----gcaattctgctaaagag 413  Q
    |||||||| ||||| | |||||||  || ||| | ||||||||| | ||| || |||||||| | ||||||||||||||    |||||| ||| |||||     
T  13812376 tgcttggccgctaaggttccttcagctggtgtgtcctctctcattagtcttctttgttcttgcgacttcaatgcattaattaagcaattttgcgaaagaa 13812277  T
Q  414 atttttgagaaatctttggtattctccaaagtagtgatggttgcttcat 462  Q
    |||||||| ||||| ||| |||||||| ||||| || ||||||||||||    
T  13812276 atttttgaaaaatccttgatattctcc-aagtaatgttggttgcttcat 13812229  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 35940014 - 35939911
Alignment:
Q  140 tttacaaataactgcttcatgccccatttgattacacttggtacacttagcatcaggtcttctccaacatctaaagggtggatgacctttctttccacag 239  Q
    ||||||||| ||  ||||||| ||||||| ||| |||||| | ||||| ||||| || |||||||||||| |||| ||||| |||||  | ||||| |||    
T  35940014 tttacaaatcacatcttcatgacccatttcattgcacttgctgcactttgcatctggccttctccaacatttaaatggtgggtgacccatttttccgcag 35939915  T
Q  240 tgtt 243  Q
    ||||    
T  35939914 tgtt 35939911  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 25429356 - 25429253
Alignment:
Q  140 tttacaaataactgcttcatgccccatttgattacacttggtacacttagcatcaggtcttctccaacatctaaagggtggatgacctttctttccacag 239  Q
    ||||||||| ||  ||||||| ||||||| ||| |||||| | ||||| ||||| || |||||||||||| |||| ||||| |||||  | ||||| |||    
T  25429356 tttacaaatcacatcttcatgacccatttcattgcacttgctgcactttgcatctggccttctccaacatttaaatggtgggtgacccatttttccgcag 25429257  T
Q  240 tgtt 243  Q
    ||||    
T  25429256 tgtt 25429253  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 257
Target Start/End: Complemental strand, 1542144 - 1542031
Alignment:
Q  144 caaataactgcttcatgccccatttgattacacttggtacacttagcatcaggtcttctccaacatctaaagggtggatgacctttctttccacagtgtt 243  Q
    ||||| || |||||||| || ||||| ||||||||| | || || |||| |||||  |||||||||||||| || ||||||||  | ||   ||||||||    
T  1542144 caaattacagcttcatgaccaatttggttacacttgctgcattttgcattaggtcgcctccaacatctaaaaggaggatgacccattttgttacagtgtt 1542045  T
Q  244 gacatggaggataa 257  Q
    | ||||||||||||    
T  1542044 ggcatggaggataa 1542031  T

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