View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3959_low_3 (Length: 359)
Name: NF3959_low_3
Description: NF3959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3959_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 345
Target Start/End: Original strand, 37178065 - 37178400
Alignment:
| Q |
16 |
aaaaatagtgtgcagtcggttatacataatttcctagttcaagttcatctttgcagaaaatgattgttaaaagaagaattaacatcacaaaactcatatt |
115 |
Q |
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| T |
37178065 |
aaaactagtatgcagtcaattatgcataatttcctagttcaagttcatctttgcagaaaatgattgttaaaagaagaattaacatcacaaaactcatatt |
37178164 |
T |
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| Q |
116 |
caaactagacaaagtaagaaacatgttatattgcacagtcaaacatgcctacaataataaagataatgtaacagtaaccattgcaattttcagtat---- |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
37178165 |
caaactagacaaagtaagaaacatgttatattgcacagtcaaagatgcctacagtaataaagataatgtaacagtaaccattgcaattttcagcatccaa |
37178264 |
T |
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| Q |
212 |
--tgaatccattaatctttccttataaaaatcaaaatctgcaaatcagcaagacacactacatgaaaaaacaatcatattccaaagccaaaaacagcacg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37178265 |
tgtgaatccattaatctttccttataaaaatcaaaatctgcaaatcagcaagacacactacatgaaaaaacaatcagattccaaagccaaaaacagcacg |
37178364 |
T |
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| Q |
310 |
tatcctttggaaaataagttccctccatcccctttc |
345 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
37178365 |
tatcctttggaaaataagttccctccatcccctttc |
37178400 |
T |
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