View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3959_low_4 (Length: 352)
Name: NF3959_low_4
Description: NF3959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3959_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 4 - 294
Target Start/End: Original strand, 38959649 - 38959940
Alignment:
| Q |
4 |
agagagcggaagaggcgtgtgcaggagacgccactagcggtgaatgtgtggcagcgtgggatgaggtggaggaattgagtgcagcggcaagccatgcaag |
103 |
Q |
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| T |
38959649 |
agagtgcggaagaggcgtgtgcaggagacgccactagcggtgaatgtgtggcggcgtgggatgaggtggaggaattgagtgcagcggcaagccatgcaag |
38959748 |
T |
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| Q |
104 |
ggataagaaaaagacgtcggaccctctcgaggaatactgcaaggacaatccggagactgatgagtgtcgcacatatgataactgaatgatactatcaaat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38959749 |
ggataagaaaaagacgtcggaccctctcgaggaatactgcaaggacaatccggagactgatgagtgtcgcacatatgataactgaatgatactatcaaat |
38959848 |
T |
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| Q |
204 |
caaatctccc-ttttattatcatttctgttgtgtattaattcattttcatttaagcatgattgaataatccatatataccatctttacaagt |
294 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38959849 |
caaatctccctttttattatcatttctgttgtgtattaattaattttcatttaagcatgattgaataatccatatataccatctttacaagt |
38959940 |
T |
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