View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3959_low_6 (Length: 291)
Name: NF3959_low_6
Description: NF3959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3959_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 286
Target Start/End: Complemental strand, 30707511 - 30707242
Alignment:
| Q |
17 |
caaaacaaacacgttctctgtgtaagagaactcacaaaaacaataatggagaaccaggagagcagtatgagaggctcaagatggtctctcaagggaacta |
116 |
Q |
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| T |
30707511 |
caaaacaaacacgttctccgtgtaagagaactcacaaaaacaacaatggagaaccaggagagcagtatgagaggctcaagatggtctctcaagggaacta |
30707412 |
T |
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| Q |
117 |
ctgctctagttactggtggaactcgtggaatcggtcatgctgtggtggaggaactagctgagtttggtgccacagtgttcacttgctctaggaatgaaga |
216 |
Q |
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| T |
30707411 |
ctgctctagttactggtggaactcgtggaatcggtcatgctgtggtggaggaactagctgagtttggtgccacagtgttcacttgctctaggaatgaaga |
30707312 |
T |
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| Q |
217 |
agagctgaataaatgcttaaatgagtggaaagagaagggtttttctgtctatggatcggtctgtgctgct |
286 |
Q |
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| T |
30707311 |
agagctgaataaatgcttaaatgagtggaaagagaagggtttttctgtctatggatcggtttgtgatgct |
30707242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 48 - 273
Target Start/End: Complemental strand, 30719846 - 30719621
Alignment:
| Q |
48 |
tcacaaaaacaataatggagaaccaggagagcagtatgagaggctcaagatggtctctcaagggaactactgctctagttactggtggaactcgtggaat |
147 |
Q |
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| T |
30719846 |
tcacaaaaacaagaatggcgaacgcagagagcagtagcagaagctcaagatggtccctcaagggattcactgctctcgtcaccggcggaacacgtggaat |
30719747 |
T |
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| Q |
148 |
cggtcatgctgtggtggaggaactagctgagtttggtgccacagtgttcacttgctctaggaatgaagaagagctgaataaatgcttaaatgagtggaaa |
247 |
Q |
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| T |
30719746 |
cggacatgctatcgtggaagaactcgctgagtttggtgccacagtctacacttgttctaggaaccaagaggagctgaataaacgcttaaatgagtggaaa |
30719647 |
T |
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| Q |
248 |
gagaagggtttttctgtctatggatc |
273 |
Q |
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| T |
30719646 |
gagaaaggtttttctgtttatggatc |
30719621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 90 - 273
Target Start/End: Complemental strand, 30702253 - 30702070
Alignment:
| Q |
90 |
gctcaagatggtctctcaagggaactactgctctagttactggtggaactcgtggaatcggtcatgctgtggtggaggaactagctgagtttggtgccac |
189 |
Q |
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| T |
30702253 |
gctcaagatggtccctcaagggattcacagctcttgtcaccggcggaactcgtgggatcggtcatgctatcgtagaggaacttgctgagtttggtgctat |
30702154 |
T |
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| Q |
190 |
agtgttcacttgctctaggaatgaagaagagctgaataaatgcttaaatgagtggaaagagaagggtttttctgtctatggatc |
273 |
Q |
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| T |
30702153 |
agtgtacacttgttctaggaatgaagaagaattgaataaatgcttaaatgagtggaaggagaaaggtttttctgtttatggatc |
30702070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 30796994 - 30797047
Alignment:
| Q |
91 |
ctcaagatggtctctcaagggaactactgctctagttactggtggaactcgtgg |
144 |
Q |
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| T |
30796994 |
ctcaagatggtccctcaaaggaaagactgctctcgtcactggtggaactcgtgg |
30797047 |
T |
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