View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3959_low_8 (Length: 264)
Name: NF3959_low_8
Description: NF3959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3959_low_8 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 264
Target Start/End: Original strand, 4756638 - 4756887
Alignment:
| Q |
15 |
cagagacatgtcgtaaggttctaaccgacgaagagaatctcaaggttggataccctcattcaaccatggtccttacaggtaaaagatcattccatggaat |
114 |
Q |
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| T |
4756638 |
cagagacatgtcgtaaggttctaaccgacgaagagaatctcaaggttggataccctcattcaaccatggtccttacaggtaaaagatcattccatggaat |
4756737 |
T |
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| Q |
115 |
ctcaaattctgaacacaaacgtttgagacgtttaatcacttctcccataaatggtgacgaagcattgtcaacttatattggtctcattgaggatagtgct |
214 |
Q |
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| T |
4756738 |
ctcaaattctgaacacaaacgtttgagacgtttaatcacttctcccataaatggtgacgaagcattgtcaacttatattagtctcattgaggatagtgct |
4756837 |
T |
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| Q |
215 |
gtgaaacatttagaagagttgtctaaaatgaacacaccatgtgagtttct |
264 |
Q |
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| T |
4756838 |
gtgaaacatttagaagagttgtctaaaatgaacacaccatgtgagtttct |
4756887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 4748803 - 4749037
Alignment:
| Q |
15 |
cagagacatgtcgtaaggttctaaccgacgaagagaatctcaaggttggataccctcattcaaccatggtccttacaggtaaaagatcattccatggaat |
114 |
Q |
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| T |
4748803 |
cagagacatgtcgtaatgtactaaaagacgaggaacatctcaagccaggataccctgcttcagctatggcacttgcagggaaaaaatcattccatggaat |
4748902 |
T |
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| Q |
115 |
ctcaaattctgaacacaaacgtttgagacgtttaatcacttctcccataaatggtgacgaagcattgtcaacttatattggtctcattgaggatagtgct |
214 |
Q |
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| T |
4748903 |
atcaagtgccgagcataaacgtttgcgaaaggtaaccacgtctccaataaatggtcacgaa---ttgtacaattatattggtctcatagaagatattgta |
4748999 |
T |
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| Q |
215 |
gtgaaacatttagaagagttgtctaaaatgaacacacc |
252 |
Q |
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| T |
4749000 |
gtgaaaaatttagaagattcgtctaaaacgaacacacc |
4749037 |
T |
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