View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3960_high_12 (Length: 338)
Name: NF3960_high_12
Description: NF3960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3960_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 202 - 324
Target Start/End: Original strand, 14074461 - 14074583
Alignment:
| Q |
202 |
agaaactcggaaccatgtttgatgcgttttgcagagactgcaaccaagcgacggatgtggtgtttgaccactccgccggcaatgcagtctgttcagagtg |
301 |
Q |
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| T |
14074461 |
agaaactcggaaccatgtttgatgcgttttgcagagactgcaaccaagcgacggatgtggtgtttgaccactccgccggcaatgcagtctgttcagagtg |
14074560 |
T |
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| Q |
302 |
tggtcttgtcttgggatctcact |
324 |
Q |
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| T |
14074561 |
tggtcttgtcttgggatctcact |
14074583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 122 - 324
Target Start/End: Original strand, 14149901 - 14150108
Alignment:
| Q |
122 |
cctttagagcaatataaagcatagttcattctcttgttctttcagcnnnnnnn-----tcattttcttcttgaaaccctagagaaagaaactcggaacca |
216 |
Q |
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| T |
14149901 |
cctttagagcattatatagcatagttcattctcttgttctttcagcaaaaaaaaaaaatcattttcttcttgaaacctaagagacagaaactcagaacca |
14150000 |
T |
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| Q |
217 |
tgtttgatgcgttttgcagagactgcaaccaagcgacggatgtggtgtttgaccactccgccggcaatgcagtctgttcagagtgtggtcttgtcttggg |
316 |
Q |
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| T |
14150001 |
tgtccgatgcgttttgcagcgactgcaagcgagcgacggatgtggtgtttgaccactccgccggcaatgcagtctgttcagagtgtggtcttgtcttggg |
14150100 |
T |
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| Q |
317 |
atctcact |
324 |
Q |
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|||||||| |
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| T |
14150101 |
atctcact |
14150108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 13609371 - 13609511
Alignment:
| Q |
184 |
tcttgaaaccctagagaaagaaactcggaaccatgtttgatgcgttttgcagagactgcaaccaagcgacggatgtggtgtttgaccactccgccggcaa |
283 |
Q |
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| T |
13609371 |
tcttgaaaccctagagagagaaactcggaaccatgtccgacgcattttgcagtgactgcaagcgagcgacggaggtggtgtttgaccgctccgctggtga |
13609470 |
T |
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| Q |
284 |
tgcagtctgttcagagtgtggtcttgtcttgggatctcact |
324 |
Q |
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|||| ||||||| ||||||||||| ||||||| ||| |||| |
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| T |
13609471 |
tgcaatctgttcggagtgtggtctcgtcttggaatcacact |
13609511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 14074205 - 14074261
Alignment:
| Q |
1 |
taaataatttttcctgaaatattagttaatatatttaatagttactacataacaatt |
57 |
Q |
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| T |
14074205 |
taaataatttttcctgaaatattacttaatatatttaatagttactacataacaatt |
14074261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 14074397 - 14074442
Alignment:
| Q |
122 |
cctttagagcaatataaagcatagttcattctcttgttctttcagc |
167 |
Q |
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| T |
14074397 |
cctttagaacaatatatagcatagttcattctcttgttctttcagc |
14074442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 13609175 - 13609214
Alignment:
| Q |
18 |
aatattagttaatatatttaatagttactacataacaatt |
57 |
Q |
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| T |
13609175 |
aatattagttaatatatttaatagttactacatagcaatt |
13609214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 14074062 - 14074118
Alignment:
| Q |
1 |
taaataatttttcctgaaatattagttaatatatttaatagttactacataacaatt |
57 |
Q |
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|||||| |||| ||| |||||||||||||||||||||| ||||||||||| ||||| |
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| T |
14074062 |
taaatatttttgactgcaatattagttaatatatttaatggttactacataccaatt |
14074118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 13609325 - 13609365
Alignment:
| Q |
127 |
agagcaatataaagcatagttcattctcttgttctttcagc |
167 |
Q |
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| T |
13609325 |
agagcaataaataacatagttcattctcttgttctttcagc |
13609365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 179 - 324
Target Start/End: Complemental strand, 36014592 - 36014445
Alignment:
| Q |
179 |
tttcttcttgaaaccctagagaaagaaa--ctcggaaccatgtttgatgcgttttgcagagactgcaaccaagcgacggatgtggtgtttgaccactccg |
276 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| |||||||| | ||||||||| |||||||| |||||||||| |
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| T |
36014592 |
tttcttcttgaaaccctagagagagaaaaactcggaaccatgtccgatgcgttttgcagcgactgcaagcgagcgacggaggtggtgttcgaccactccg |
36014493 |
T |
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| Q |
277 |
ccggcaatgcagtctgttcagagtgtggtcttgtcttgggatctcact |
324 |
Q |
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||||| ||||||||||||| ||||||||||| ||||||| |||||||| |
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| T |
36014492 |
ccggcgatgcagtctgttcggagtgtggtctcgtcttggaatctcact |
36014445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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