View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3960_high_15 (Length: 250)

Name: NF3960_high_15
Description: NF3960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3960_high_15
NF3960_high_15
[»] chr1 (5 HSPs)
chr1 (83-247)||(16141626-16141786)
chr1 (21-82)||(30339636-30339697)
chr1 (21-82)||(20186879-20186940)
chr1 (21-82)||(51787272-51787333)
chr1 (21-60)||(9673007-9673046)
[»] chr4 (1 HSPs)
chr4 (21-82)||(52055186-52055247)
[»] chr8 (2 HSPs)
chr8 (21-81)||(3780397-3780457)
chr8 (21-61)||(4076982-4077022)
[»] chr7 (7 HSPs)
chr7 (21-83)||(11765706-11765768)
chr7 (21-77)||(7527302-7527358)
chr7 (24-82)||(496683-496741)
chr7 (21-83)||(2286457-2286519)
chr7 (21-82)||(25185971-25186032)
chr7 (21-76)||(42535252-42535307)
chr7 (21-61)||(40855190-40855230)
[»] chr6 (1 HSPs)
chr6 (21-82)||(33594557-33594618)
[»] chr5 (4 HSPs)
chr5 (21-82)||(25955998-25956059)
chr5 (21-77)||(38280311-38280367)
chr5 (24-85)||(1501410-1501471)
chr5 (21-60)||(7886377-7886416)
[»] chr3 (3 HSPs)
chr3 (22-82)||(29836808-29836868)
chr3 (21-83)||(47940825-47940887)
chr3 (21-77)||(49786398-49786454)
[»] chr2 (2 HSPs)
chr2 (21-82)||(13922185-13922246)
chr2 (21-77)||(11828962-11829018)


Alignment Details
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 83 - 247
Target Start/End: Original strand, 16141626 - 16141786
Alignment:
Q  83 aaataacaataataaatttgataccctaaataatgatacccctctgtccatccatgctcaaggccagtctttatctccactttatacttaaattgtgtaa 182  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  16141626 aaataacaataataaatttgataccctaaaaaatgatacccctctgtcca----tgctcaaggccagtctttatctccactttgtacttaaattgtgtaa 16141721  T
Q  183 accttcacgacataacctgacactattgttaggactttgtttgataaaaataaaagatatcccat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16141722 accttcacgacataacctgacactattgttaggactttgtttgataaaaataagagatatcccat 16141786  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 30339697 - 30339636
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtccatgtatcactactc 82  Q
    ||||||||| |||||||||||||||||||||||||||||||  ||| |||||||||| ||||    
T  30339697 cacatgtttatgtagaggtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 30339636  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 20186879 - 20186940
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtccatgtatcactactc 82  Q
    ||||||||| ||| |||||||||||||||||||||||||||  ||| |||||||||| ||||    
T  20186879 cacatgtttatgtggaggtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 20186940  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 51787333 - 51787272
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtccatgtatcactactc 82  Q
    ||||||||| |||  |||||||||||||||||||||||||| |||| |||||||||| ||||    
T  51787333 cacatgtttatgtgaaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 51787272  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 9673007 - 9673046
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctat 60  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  9673007 cacatgtttatgtggaggtttaagtgtgtatgccacctat 9673046  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 52055186 - 52055247
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtccatgtatcactactc 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  52055186 cacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 52055247  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 3780397 - 3780457
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtccatgtatcactact 81  Q
    ||||||||||||| ||||||| ||||||||||||||||||| |||| ||||||||||||||    
T  3780397 cacatgtttgtgtggaggtttgagtgtgtatgccacctatggatgtacatgtatcactact 3780457  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 4076982 - 4077022
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctatg 61  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  4076982 cacatgtttgtgtggaggtttaagtgtgtatgccacctatg 4077022  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 11765768 - 11765706
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtccatgtatcactactca 83  Q
    ||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||||| |||||    
T  11765768 cacatgtttatgtggaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactca 11765706  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 7527302 - 7527358
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtccatgtatcac 77  Q
    ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||||||    
T  7527302 cacatgtttgtgtggaggtttaagtgtgtatgccaccaatgaatatgcatgtatcac 7527358  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 496741 - 496683
Alignment:
Q  24 atgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtccatgtatcactactc 82  Q
    |||||| ||| ||||||||||||||||||||||||||| |||| |||||||||| ||||    
T  496741 atgtttatgtggaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 496683  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 2286519 - 2286457
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtccatgtatcactactca 83  Q
    ||||||||||||| ||||||||||||||||||||||| ||   ||| ||||||||||||||||    
T  2286519 cacatgtttgtgtggaggtttaagtgtgtatgccaccaataggtgtgcatgtatcactactca 2286457  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 25185971 - 25186032
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtccatgtatcactactc 82  Q
    ||||||||||||| |||||||||||||||||| ||||||||| ||| |||| ||||| ||||    
T  25185971 cacatgtttgtgtggaggtttaagtgtgtatgtcacctatgagtgtgcatgcatcaccactc 25186032  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 42535252 - 42535307
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtccatgtatca 76  Q
    ||||||||| ||| |||||||||||||||||| ||||||||| ||| ||| |||||    
T  42535252 cacatgtttatgtggaggtttaagtgtgtatgtcacctatgagtgtacatatatca 42535307  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 40855190 - 40855230
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctatg 61  Q
    ||||||||||||||||||||||||||| ||| |||| ||||    
T  40855190 cacatgtttgtgtagaggtttaagtgtatataccacatatg 40855230  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 33594557 - 33594618
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtccatgtatcactactc 82  Q
    |||||||||||||  |||||||||||||||||||||| ||| |||| |||||||||||||||    
T  33594557 cacatgtttgtgtgaaggtttaagtgtgtatgccaccaatggatgtgcatgtatcactactc 33594618  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 25955998 - 25956059
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtccatgtatcactactc 82  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||| ||||    
T  25955998 cacatgtttgtgtggaggtttaaatgtgtatgccacctatgagtgtgcatgtatcaccactc 25956059  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 38280311 - 38280367
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtccatgtatcac 77  Q
    ||||||||| ||| ||||||||||||||||| ||||||||| |||| ||||||||||    
T  38280311 cacatgtttatgtggaggtttaagtgtgtataccacctatggatgtacatgtatcac 38280367  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 1501410 - 1501471
Alignment:
Q  24 atgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtccatgtatcactactcaaa 85  Q
    |||||| ||| |||||||||||||||||| |||||||| || | |||||||||| |||||||    
T  1501410 atgtttatgtggaggtttaagtgtgtatgtcacctatggatctgcatgtatcaccactcaaa 1501471  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 7886416 - 7886377
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctat 60  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  7886416 cacatgtttgtgtggaggtttaagtgtgtatgtcacctat 7886377  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 29836808 - 29836868
Alignment:
Q  22 acatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtccatgtatcactactc 82  Q
    |||| ||||||| |||||||||||||||||||||||||||| ||| |||||||||| ||||    
T  29836808 acatatttgtgtggaggtttaagtgtgtatgccacctatgagtgtgcatgtatcaccactc 29836868  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 47940887 - 47940825
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtccatgtatcactactca 83  Q
    ||||||||||||| ||||||||||||||||||||||| ||   ||| ||||||||||||||||    
T  47940887 cacatgtttgtgtggaggtttaagtgtgtatgccaccaataggtgtgcatgtatcactactca 47940825  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 49786454 - 49786398
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtccatgtatcac 77  Q
    ||||||||| ||| |||||||||||||||||||||||||||  ||| ||||||||||    
T  49786454 cacatgtttatgtggaggtttaagtgtgtatgccacctatgggtgtacatgtatcac 49786398  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 13922246 - 13922185
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtccatgtatcactactc 82  Q
    |||||||||  || ||||||||||||||||||||||||||| |||| |||||||||| ||||    
T  13922246 cacatgtttacgtggaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 13922185  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 11829018 - 11828962
Alignment:
Q  21 cacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtccatgtatcac 77  Q
    ||||| ||| ||| |||||||||||||||||||||||||||| ||| ||||| ||||    
T  11829018 cacatatttatgtggaggtttaagtgtgtatgccacctatgagtgtgcatgtctcac 11828962  T

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