View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3960_high_4 (Length: 480)
Name: NF3960_high_4
Description: NF3960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3960_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 19 - 478
Target Start/End: Original strand, 30005384 - 30005843
Alignment:
| Q |
19 |
tgtatttctttttcaacacattagattatagagcaatcatttgtggttttcagtaagttcatgtatatcttcatggtcagttccaatgtcttgattatgc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30005384 |
tgtatttctttttcaacacattagattatagagcaatcatttgtggttttcagtaagttaatgtatatcttcatggtcagttccaatgtcttgattatgc |
30005483 |
T |
|
| Q |
119 |
taccgctacatttcgatgatgggaaaacatatttaacgtatgatattatttatatataccagaaaacttacggtatttaattgcaaataggtcagaataa |
218 |
Q |
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| T |
30005484 |
tactgctacatttcgatgatgggaaaacatatttaacgtatgatattatttatatataccagaaaacttacggtatttaattgcaaataggtcagaataa |
30005583 |
T |
|
| Q |
219 |
tgaaaagattgaggcatccaaatgtggttctcttcatgggagctgtaattcgacctccaaatctttcaattgttactgaatatcttccaaggtaacttga |
318 |
Q |
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| T |
30005584 |
tgaaaagattgaggcatccaaatgtggttctcttcatgggagctgtaattcgacctccaaatctttcaattgttactgaatatcttccaaggtaacttga |
30005683 |
T |
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| Q |
319 |
aattcttcactttcaagagtttcatagagnnnnnnnatttttgaatcttggaatgctaagatgtacataatctgtatgcagaggaagtttgtatagatta |
418 |
Q |
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| T |
30005684 |
aattcttcactttcaagagtttcatagagcccccccatttttgaatcttggaatgctaagatgtacataatctgtatgcagaggaagtttgtatagatta |
30005783 |
T |
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| Q |
419 |
attcatcggcctaacaatcaattagatgagcgaaagcgtttgcgaatggcctttgctact |
478 |
Q |
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| T |
30005784 |
attcatcggcctaacaatcaattagatgagcgaaagcgtttgcgaatggcccttgatact |
30005843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 5525520 - 5525779
Alignment:
| Q |
19 |
tgtatttctttttcaacacattagattatagagcaatcatttgtggttttcagtaagttcatgtatatcttcatggtcagttccaatgtcttgattatgc |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||| ||||| |||||||||||||||||||||| |
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| T |
5525520 |
tgtatttctttttcaacaca--agattatagagcaatcatttgtgattttctgtaagttcatgaatatctctatggtgagttccaatgtcttgattatgc |
5525617 |
T |
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| Q |
119 |
taccgctacatttcgatgatgggaaaacatatttaacgtatgatattatttatatataccagaaaacttacggtatttaattgcaaataggtcagaataa |
218 |
Q |
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||| ||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
5525618 |
tactgctacatttagatgatggtaaaacatatttaacgtatgatattttttatatataccagaaaacttacgttatttaattacaaataggtcagaataa |
5525717 |
T |
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| Q |
219 |
tgaaaagattgaggcatccaaatgtggttctcttcatgggagctgtaattcgacctccaaat |
280 |
Q |
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| T |
5525718 |
tgaaaagattgaggcatccaaatgtggttctcttcatgggagctgtaattcgacctccaaat |
5525779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 204 - 327
Target Start/End: Original strand, 45203412 - 45203535
Alignment:
| Q |
204 |
aataggtcagaataatgaaaagattgaggcatccaaatgtggttctcttcatgggagctgtaattcgacctccaaatctttcaattgttactgaatatct |
303 |
Q |
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|||||||| |||||||| |||| |||||||||||||||| |||||||||||||||||| ||| | |||||||||||||||||||||||||||||| ||| |
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| T |
45203412 |
aataggtccaaataatgagaagactgaggcatccaaatgttgttctcttcatgggagctataactagacctccaaatctttcaattgttactgaatttct |
45203511 |
T |
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| Q |
304 |
tccaaggtaacttgaaattcttca |
327 |
Q |
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| T |
45203512 |
tcctaggtaatttgcaatccttca |
45203535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 469
Target Start/End: Original strand, 45204088 - 45204162
Alignment:
| Q |
395 |
tgcagaggaagtttgtatagattaattcatcggcctaacaatcaattagatgagcgaaagcgtttgcgaatggcc |
469 |
Q |
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|||||||| ||||| |||||||||||||| || ||||||||||||||||| || |||| ||| ||| | |||||| |
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| T |
45204088 |
tgcagagggagtttatatagattaattcaccgacctaacaatcaattagacgaacgaaggcggttgaggatggcc |
45204162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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