View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3960_high_5 (Length: 415)
Name: NF3960_high_5
Description: NF3960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3960_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 405
Target Start/End: Complemental strand, 54300428 - 54300035
Alignment:
| Q |
16 |
cctatttcatttgtttgatttttatatcctatcatatcatataccgatcatgacactgac-ccgatgataatttgagaaaatgacatgtaatcacatatc |
114 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
54300428 |
cctatttcatttgtatgatttttatatcctatcatatcatataccgatcatgacactgacaccgatggtaatttgagaaaatgacatgtaatcacatatc |
54300329 |
T |
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| Q |
115 |
tatgtatcgggccctattgaacacttgtcacacctctgataagatcagaagtgtccgtgctacggtgtt-gatcatatcatatatactagcatggttcca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||| |
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| T |
54300328 |
tatgtatcgggccctattgaacacttgtcacacctctgataagatcagaagtgtccgtgctatggtgtttgatcatatcatatatactaccatggttcca |
54300229 |
T |
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| Q |
214 |
nnnnnnnnn--atttactatggaatgacttggtttctatcttatatgcatggaattggagggtataggtgactttccgtgatccagaggctgctaggaga |
311 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54300228 |
tttttttttttatttactatagaatgacttggtttctatcttatatgcatggaattggagggtataggtgactttccgtgatccagaggctgctaggaga |
54300129 |
T |
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| Q |
312 |
gcctgtgctgatccaagtcctgttattgatggtagaagggctaattgtaacttagcttcacatggtcgtccacgtggaccccctatctcctatg |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54300128 |
gcctgtgctgatccaagtcctgttattgatggtagaagggctaattgtaacttagcttcacatggtcgtccacgtggaccccctatctcctatg |
54300035 |
T |
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