View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3960_high_7 (Length: 393)
Name: NF3960_high_7
Description: NF3960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3960_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 156 - 389
Target Start/End: Complemental strand, 27715074 - 27714828
Alignment:
| Q |
156 |
aggtgtaaatcatggtgtttaagtagagctcttcctttttgtatcttaaggatatttggtgtatttttgtacatcttgttttagcaaaaaactagtaaca |
255 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27715074 |
aggtgtaaatcatggtgtgtaagtagagctcttcctttttgtatcttaaggatatttggtgtatttttgtacatcttgttttagcaaataactagtaaca |
27714975 |
T |
|
| Q |
256 |
ccttatcacgaggaatcttagaactttgaagtagggtt-------------taattgccttcgttatttccattccatcattctcttgcttatttctctt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27714974 |
ccttatcacgaggaatcttagaactttgaagtagggcttatattattgacataattgccttcgttatttccattccatcattctcttgcttatttctctt |
27714875 |
T |
|
| Q |
343 |
agaatcattcattaccattaggagaactctaataacctttgctactc |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27714874 |
agaatcattcattaccattaggagaactctaataacctttgttactc |
27714828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 44753952 - 44754061
Alignment:
| Q |
19 |
tctcaaatagaatt-ggtgtattggtgtggatttgcttgccgtatgctagctatggtgcgtcctggatgctagatgagcttattgtcatcttattagtta |
117 |
Q |
| |
|
|||||||||||||| ||| || ||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
44753952 |
tctcaaatagaatttggtataatggtgtggatttgcttgccatatgctagctatggtgcttcctggatgctggatgagattattgtcatcttattagtta |
44754051 |
T |
|
| Q |
118 |
ctgaaggacc |
127 |
Q |
| |
|
|||||||||| |
|
|
| T |
44754052 |
ctgaaggacc |
44754061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 44754122 - 44754190
Alignment:
| Q |
175 |
taagtagagctcttcctttttgtatcttaaggatatttggtgtatttttgtacatcttgttttagcaaa |
243 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
44754122 |
taagtagagctctttctttttgtatctgaaggatatttggtgtagttttgtacatctagttttagcaaa |
44754190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University